1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtacgagacattgatgacttgacactttttttcttccttctgattggttttttctttcagtactaactgaaacttgtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGTGATCGCTTTAAAAATCTGTTGCCTTCTGAAGCTAATGTGAAATGTGTTC
species | Glycine max |
transcript | GLYMA16G17150.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGTEST: gi|9986447|gb|BE660555.1|BE660555
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: AGCTGTAATGGAAGAATTACTAGCANAAGGATTGGAAAAGGCTGGAAAAT GCTATTCTCTCTGGCTGTEST: gi|6455064|gb|AW185747.1|AW185747
genomic: AGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTG-AAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGT
EST: AGCTGTAATGGAAGAATTACTAGCAGAAAG-ATTGGAAAAAGCTGAAGAT GCTATTCTCTCTAGCTGTTCAGCTGGAAGACTGACTACAATATTACACTGTEST: gi|7590021|gb|AW705783.1|AW705783
genomic: AGCTGTAATGGAAGAATTACTAGCA-AAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGTEST: gi|9986449|gb|BE660557.1|BE660557
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT GCTATTCTCTCTGGCTGGTCAACTGGAGGACTGACTACAATATTACACTGTEST: gi|5770415|gb|AI973589.1|AI973589
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGTEST: gi|192301230|gb|FG990180.1|FG990180
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGTEST: gi|6455714|gb|AW186397.1|AW186397
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGTEST: gi|6724652|gb|AW309107.1|AW309107
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGTEST: gi|163921421|gb|EH038959.1|EH038959
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGTEST: gi|151395749|gb|EV265626.1|EV265626
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGTEST: gi|6341667|gb|AW164491.1|AW164491
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: CAGCTGTAATGCAAGAATTACTATCAAAAGGATTGGAAAATGCTGAAAAT GCTATTCTCTCTGGCTGTEST: gi|7589352|gb|AW705128.1|AW705128
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGT
EST: CAGCTGTAATGGAAGAATTACTAGCCAAAGGATAGGAAACGGCTGAGAAT GCTACTCTCTCTGGCTGTGCACCTGGAGGACTGACTACAATEST: gi|9986448|gb|BE660556.1|BE660556
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAAT
EST: GCTGTNATGGAAGAATTACTAGCAAAAGGGATTGGAAAAGGCTTGAAAAT GCTATTCTCTCTGGCTGGTCAACTTGGAGGACTGACTACCATTATTACACEST: gi|9986450|gb|BE660558.1|BE660558
genomic: GCTGTAATGGAAGAATTACTAGCAAAAGG-ATTGGAAAAGGCT-GAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCT-GGAGGACTGACTACAAT-ATTACAC
EST: AGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTTGAAAAT GCTATTCTCTCTGGCTGT-CAGCTGGAGGACTGACTACAATATTACACTGEST: gi|6668142|gb|AW279593.1|AW279593
genomic: AGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCT-GAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTG
EST: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGTEST: gi|5753593|gb|AI960880.1|AI960880
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGTEST: gi|7589195|gb|AW704974.1|AW704974
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGTEST: gi|298163578|gb|HO012311.1|HO012311
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGTEST: gi|6070716|gb|AW100103.1|AW100103
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAGAAT GCTATTCTCTCTGEST: gi|9986445|gb|BE660553.1|BE660553
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTG
EST: AGCTGTAATGGAAGAATTACTAGCAAAAAGGATTGGAAAANGCTGAAAAT GCTATTCTCTCTTGGCTGGTCAACTTGGAGGACTGACTACAATATTACACTEST: gi|6341492|gb|AW164316.1|AW164316
genomic: AGCTGTAATGGAAGAATTACTAGCAAAA-GGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCT-GGCTGTTCAGCT-GGAGGACTGACTACAATATTACACT
EST: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGTEST: gi|6724637|gb|AW309092.1|AW309092
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAAGCTGAAAAT GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
ttcttccttctgattggttttttctttcagtactaactgaaacttgtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGTGATCGCTTTAAAAATCTGTTGCCTTCTGAAGCTAATGTGAAATGTGTTC
tactaac putative branch site (score: 0)
ttttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgagacattgatgacttgacactttttttcttccttctgattggttttttctttcagtactaactgaaacttgtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGTGATCGCTTTAAAAATCTGTTGCCTTCTGAAGCTAATGTGAAATGTGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC