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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggagtgaagtatgtgttgatagattggcacagctttgtgcgttgttcttttgtgttgaagtttttagaaacttttgcagCTAGGAACAATAATTTCTGGTAGCCAAAACGAGGAACGTCTTAACATGATAAGCTCCAG

Basic information

species Glycine max
transcript GLYMA16G09690.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214009437|gb|DB990643.1|DB990643
EST:     GCCAGAATGATGATGGTACTGTAGCTGCATTTGACTTGGTTGTCCCAAAG                         CTAGGAACAATAATTTCTGGTAGCCAAAACGAGGAACGTCTTAACATGATA
genomic: GCCAGAATGATGATGGTACTGTAGCTGCATTTGACTTGGTTGTCCCAAAGgtatggagtg ... acttttgcagCTAGGAACAATAATTTCTGGTAGCCAAAACGAGGAACGTCTTAACATGATA
EST: gi|192310196|gb|FK002580.1|FK002580
EST:     GCCAGAATGATGATGGTACTGTAGCTGCATTTGACTTGGTTGTCCCAAAG                         CTAGGAACAATAATTTCTGGTAGCCAAAACGAGGAACGTCTTAACATGATA
genomic: GCCAGAATGATGATGGTACTGTAGCTGCATTTGACTTGGTTGTCCCAAAGgtatggagtg ... acttttgcagCTAGGAACAATAATTTCTGGTAGCCAAAACGAGGAACGTCTTAACATGATA
EST: gi|192310197|gb|FK002581.1|FK002581
EST:     GCCAGAATGATGATGGTACTGTAGCTGCATTTGACTTGGTTGTCCCAAAG                         CTAGGAACAATAATTTTTGGTAGCCAAAACGAGGAACGTCTTAACATGATA
genomic: GCCAGAATGATGATGGTACTGTAGCTGCATTTGACTTGGTTGTCCCAAAGgtatggagtg ... acttttgcagCTAGGAACAATAATTTCTGGTAGCCAAAACGAGGAACGTCTTAACATGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggcacagctttgtgcgttgttcttttgtgttgaagtttttagaaacttttgcagCTAGGAACAATAATTTCTGGTAGCCAAAACGAGGAACGTCTTAACATGATAAGCTCCAG
                                              cttttgc  CT-rich tract
                                    tttttagaaactttt  TA-rich tract