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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttctatcccttttatgttttatatttccccacttgttttacttttcaagaagccagatctgtcttttagcataattcgtagtactgattacagGTAATCTGTTGGGTTCTTGGGGAATATGGCACTGCTGATGGAAAATATTCTGCTTCGTATATCACTGGGAAGCTATGTGATGTTGCAGAGGCATATTCAA

Basic information

species Glycine max
transcript GLYMA16G08320.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08320.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G146697_T03 (Zea mays), 3'ss of exon 7
gtactttctatcccttttatgttttatatttccccacttgtttta-cttttcaagaagccagatctgtcttttagcataattcgtagtactgattacagGTAATCTGTTGGGTTCTTGGGGAATATGGCACTGCTGATGGAAAATATTCTGCTTCGTATATCACTGGGAAGCTATGTGATGTTGCAGAGGCATATTCAA
                        ||  | |   | |||||  || || ||| |||    || |  |   | |   ||  |   |  |      | ||| |||| || |||||| | ||||||||||| || || |||||||||||||| ||||| ||||| | ||||||| | |||||||| ||||||||  |    |
-----------------------gtagttgttttc-cttgtcctatctattccagattatagtttcgggatattatatgttgattcatttcatgttcagATAATATGCTGGGTTTTGGGGGAATATGGAACAGCAGATGGAAAATATTCAGCTTCTTATATTATTGGGAAGTTGTGTGATGTGGCAGAGGCCCACCTCA

upper sequence: GLYMA16G08320.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G031352_T01 (Zea mays), 3'ss of exon 6
gtactttctatcccttttatgttttatatttccccacttgttttacttttcaagaagccagatctg---tcttttagcataattcgtagtactgattacagGTAATCTGTTGGGTTCTTGGGGAATATGGCACTGCTGATGGAAAATATTCTGCTTCGTATATCACTGGGAAGCTATGTGATGTTGCAGAGGCATATTCAA
                    ||  | |||||  |   |  |||  || ||| | |    || | ||   | |||||   | |||| |  |  |     ||| |||| || |||||  | ||||||||||| || || ||||||||| |||| ||||| ||||| | ||||||  | |||||||| ||||||||  |    |
--------------------gtagt-tatttttcttgtccttt--ctattccaaactatagttttgggatgttttaagttgattcattatgtt-----cagATAATATGCTGGGTGTTGGGGGAATATGGAACAGCAGATGGAAAACATTCGGCTTCTTATATTATTGGGAAATTGTGTGATGTGGCAGAGGCCCACCTCA

upper sequence: GLYMA16G08320.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G31730.1 (Arabidopsis thaliana), 3'ss of exon 6
gtactttctatcccttttatgttttatatttccccacttgttttacttttcaagaagccagatctgtcttttagcataattcgtagtactgattacagGTAATCTGTTGGGTTCTTGGGGAATATGGCACTGCTGATGGAAAATATTCTGCTTCGTATATCACTGGGAAGCTATGTGATGTTGCAGAGGCATATTCAA
          |   |||| |  | |  || || || | |    |  |||||   ||   |  | ||| | |||  ||        ||    | | ||||| || | ||||||| | || ||||||||||| |||||||| ||||||||||| || ||||| | ||| ||||| || ||||| ||||| ||||| ||||
---------gttgattttgttctctg-atctctccgcataccatttttttccgcaacgaatttttgtttcttactattg-----ggtttaaacttcagGTCATTTCTTGGGTTTTGGGAGAATATGGCACAGCTGATGGGAAATATTCTGCCTCCTATATTAGTGGAAAGCTGTGCGATGTGGCAGATGCATACTCAA

upper sequence: GLYMA16G08320.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv02s0087g00690.t01 (Vitis vinifera), 3'ss of exon 7
gtactttctatcccttttatgttttatatttccccacttgttttacttttcaaga----agccaga-----tctgtcttttagcataattcgtagtactgat-tacagGTAATCTGTTGGGTTCTTGGGGAATATGGCACTGCTGATGGAAAATATTCTGCTTCGTATATCACTGGGAAGCTATGTGATGTTGCAGAGGCATATTCAA
|||| |||| | |  | |      ||| |||   || |||||||     |  ||     |  || |       ||| | ||| | || ||  | || ||||| ||||||| || ||||||||| | || || ||||| ||||| | |||||| ||||||||||| ||||||||||| ||| |||||||||| ||||||||  ||||||
gtacattctgttctatctggacactat-ttttgtcatttgttttctgcatgtaggcattattcacaaaactcttgtttattatcttagttgttggttctgatctacagGTTATTTGTTGGGTTTTGGGTGAGTATGGAACTGCGGGTGGAAAGTATTCTGCTTCCTATATCACTGGAAAGTTATGTGATGTGGCAGAGGCCCATTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttttcaagaagccagatctgtcttttagcataattcgtagtactgattacagGTAATCTGTTGGGTTCTTGGGGAATATGGCACTGCTGATGGAAAATATTCTGCTTCGTATATCACTGGGAAGCTATGTGATGTTGCAGAGGCATATTCAA
                                           tactgat  putative branch site (score: 2)
                                ataatt  TA-rich tract