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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttaaagtgctgtttagttactctggtttctgatgatcactaactatatttttactgtttgaatcttttgtacatattttaattagGTTCTAGATGAAATTCACCACCAATCTGTTGTTTTATCTTCCCGCCCATCTGTATCTTCTATTGGATCTGTTCCTGCACCTAATGATGTTGTCGATTCCT

Basic information

species Glycine max
transcript GLYMA16G08260.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08260.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G135909_T01 (Zea mays), 3'ss of exon 3
gtaattttaaagtgctgtttagttactctggtttctgatgatcactaactatattttt-actgtttga----atcttttgtacatattttaat------tagGTTCTAGATGAAATTCACCACCAATCTGTTGTTTTATCTTCCC---GCCCATCTGTATCTTCTATTGGATCTGTTCCTGCACCTAATGATGTTGTCGATTCCT
 | | |  |||     | |||  | || |  |    || |  || ||  | | || || ||||   ||    | |||   | | |||  | ||       ||||||| ||||||||||||||||||||||  |  ||||| ||     | |||||  | ||||| |||||||| |||||||| || |  ||  |||| ||     
-ttagtccaaatctaggattacattcttttttggacgaagg-caatagttttgttcttgactggaggatactaacttgcatccttatggttatgactttcagGTTCTGGATGAAATTCACCACCAATCTGCCGCATTATCGTCATCAAGACCATCATTTTCTTCAATTGGATCCGTTCCTGCTCCAAGGGAGATTGTTGAGC---

upper sequence: GLYMA16G08260.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G060999_T01 (Zea mays), 3'ss of exon 3
------------------------------------------------------------------------------------------gtaattttaaa--gtgctgtttagttactctggtttctgatgat--cactaact--atatttttactgtttgaatcttttgtacatattttaattagGTTCTAGATGAAATTCACCACCAATCTGTTGTTTTATCTTCCC---GCCCATCTGTATCTTCTATTGGATCTGTTCCTGCACCTAATGATGTTGTCGATTCCT
                                                                                           ||  |  |||  || ||  | |  |  |  | ||  |  | ||     | |||  | |    ||||   |       ||||   ||||    | ||||||| |||||||||||||||||||||| ||  ||||| ||     | ||| |  | ||||| ||||||||||||||||| || |  ||  |||| ||     
gtacgttgtgcaaatatacgtactgcctctgtccaaaaaatgattgtaattctcgcttttaataagtcaatcaatatcaagtttgatcaaatagatacaaaaggtactaataatatcattagattaatagtaatgttcttgactgaagaaggatactaacttgcatccttgtggttattactttcagGTTCTGGATGAAATTCACCACCAATCTGCTGCGTTATCGTCATCAAGACCAGCGTTTTCTTCAATTGGATCTGTTCCTGCTCCAAGGGAGATTGTTGAGC---

upper sequence: GLYMA16G08260.1 (Glycine max), 3'ss of exon 6
lower sequence: AT5G45290.2 (Arabidopsis thaliana), 3'ss of exon 3
gtaattttaaagtgctgtttagttactctggtttctgatgatcactaactatatttttactgtttg-----aatcttttgtacatattttaattagGTTCTAGATGAAATTCACCACCAATCTGTTGTTTTATCTTCCCGCC---CATCTGTATCTTCTATTGGATCTGTTCCTGCACCTAATGATGTTGTCGATTCCT
|||| |  |   |   | |        ||     ||  |   ||||| || | ||| |  ||| ||      ||||   || |||   ||  ||||||||| ||||||||||| || ||||||||||| ||||| || |  |   |||| ||||| ||||| |||||||||||||||||||| || ||||| ||||   
gtaaatacatgttttcggtct-ccctactaacagctttttgccactatctttctttctcatgtatgctaaggatctacagtgcattcatt--ttagGTTCTTGATGAAATTCATCAGCAATCTGTTGTCTTATCCTCTCAACAACCATCAGTATCATCTATAGGATCTGTTCCTGCACCTAACGACGTTGTGGATT---

upper sequence: GLYMA16G08260.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv02s0087g00420.t01 (Vitis vinifera), 3'ss of exon 3
gtaattttaaagtgctgtttagttactctggtttctgatgatcactaactatatttttactgtttga-atcttttgtacatattttaat-----tagGTTCTAGATGAAATTCACCACCAATCTGTTGTTTTATCTTCCCGCCCATCTGTATCTTCTATTGGATCTGTTCCTGCACCTAATGATGTTGTCGATTCCT
|| ||  |||  |  | ||   ||  | || |      |  ||    | | | ||| ||   ||  | ||   ||| |  | |||| ||     |||||||| |||||||||||||| |||||||| || ||||| ||||| || ||||||||||||||||| ||||||||||| || ||||| ||||| || || |
gtgatgctaatatattattatatt-ttgtgatggtcacttttccagtattttctttgtatcattcaatataagttgaatttttttttatacctatagGTTCTGGATGAAATTCACCAGCAATCTGTGGTCTTATCGTCCCGACCTTCTGTATCTTCTATTGGTTCTGTTCCTGCTCCAAATGAAGTTGTAGAATCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgatcactaactatatttttactgtttgaatcttttgtacatattttaattagGTTCTAGATGAAATTCACCACCAATCTGTTGTTTTATCTTCCCGCCCATCTGTATCTTCTATTGGATCTGTTCCTGCACCTAATGATGTTGTCGATTCCT
      cactaac  putative branch site (score: 1)
                          tttgaatcttttgtac  TA-rich tract