1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctttagtcaaacctttggtttttatattatttccctttgaaagttctgtgtattttcctttgttaactttgtgttattttcttttcttttttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATAGTTCTTGCTGCTTAGTCAAAGATTGTCTCAATTCCATTATGGAGCAAAT
species | Glycine max |
transcript | GLYMA16G08200.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTG ACATGCTTGCTTT-GGTGATTTT-GGGATTGTGCT-CTCATCGTGATCATAEST: gi|9564950|gb|BE474459.1|BE474459
genomic: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTGgtaatatatc ... ttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATA
EST: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTG ACATGCTTGCTTTTTGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATAEST: gi|15000694|gb|BI321508.1|BI321508
genomic: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTGgtaatatatc ... ttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATA
EST: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTG ACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATAEST: gi|209696534|gb|BW683186.1|BW683186
genomic: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTGgtaatatatc ... ttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATA
EST: TCAAAAACCCAAAGATCAAATTCCTCTTTG ACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCAATCGTGATCATEST: gi|21888894|gb|BQ742107.1|BQ742107
genomic: TCAAAAACCCAAAGATCAAATTCCTCTTTGgtaatatatc ... ttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTC-ATCGTGATCAT
EST: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTG ACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATAEST: gi|151398998|gb|EV268869.1|EV268869
genomic: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTGgtaatatatc ... ttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATA
EST: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTG ACATGCTTGCTTTTGGTGATTTTTTGGGATTGTGCTTCTCATCGTGATCATEST: gi|27809121|gb|CB063543.1|CB063543
genomic: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTGgtaatatatc ... ttcttcaaagACATGCTTGCTTTTGGTGATTTTT-GGGATTGTGCTTCTCATCGTGATCAT
EST: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTG ACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATAEST: gi|7232940|gb|AW568291.1|AW568291
genomic: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTGgtaatatatc ... ttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATA
EST: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTG ACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATAEST: gi|9819749|gb|BE555262.1|BE555262
genomic: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTGgtaatatatc ... ttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATA
EST: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTG ACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATAEST: gi|192315290|gb|FK009610.1|FK009610
genomic: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTGgtaatatatc ... ttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATA
EST: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTG ACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATAEST: gi|42722596|gb|CK768495.1|CK768495
genomic: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTGgtaatatatc ... ttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATA
EST: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTG ACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATAEST: gi|10254732|gb|BE822498.1|BE822498
genomic: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTGgtaatatatc ... ttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATA
EST: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTG ACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATA
genomic: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTGgtaatatatc ... ttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATA
ctgtgtattttcctttgttaactttgtgttattttcttttcttttttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATAGTTCTTGCTGCTTAGTCAAAGATTGTCTCAATTCCATTATGGAGCAAAT
tgttaac putative branch site (score: 2)
ttaactttgtgttatt CT-rich tract
ttattttcttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttagtcaaacctttggtttttatattatttccctttgaaagttctgtgtattttcctttgttaactttgtgttattttcttttcttttttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATAGTTCTTGCTGCTTAGTCAAAGATTGTCTCAATTCCATTATGGAGCAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - tcaaacc
- - - - - - - - - - - - - - - - ccctttg
- - - - - - - - - - - - - - - - - - - - - -ttctgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctttg