1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atcctagaagaaaatgattagaaataatcacaccaatttgactcgggttgcatcatgcctgtgatcatttcaacctataactgactggctctttttacagGTTACAGCTGTTAATCTTAGAGATGGAACCACGCTATCTGTGGACATGGTTGTGGTGGGAATTGGAATACGTCCAAATACAGGTTTGTTTGAAGGCCAAC
species | Glycine max |
transcript | GLYMA16G07970.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCATTAAGGGAACTGTGCTGTCATCATTTGATTTTGACTCCAATGGGAAG GTTACAGCTGTTAATCTTAGAGATGGAACCACGCTATCTGTGGACATGGTT
genomic: TCATTAAGGGAACTGTGCTGTCATCATTTGATTTTGACTCCAATGGGAAGgtactttata ... ctttttacagGTTACAGCTGTTAATCTTAGAGATGGAACCACGCTATCTGTGGACATGGTT
ggttgcatcatgcctgtgatcatttcaacctataactgactggctctttttacagGTTACAGCTGTTAATCTTAGAGATGGAACCACGCTATCTGTGGACATGGTTGTGGTGGGAATTGGAATACGTCCAAATACAGGTTTGTTTGAAGGCCAAC
aactgac putative branch site (score: 2)
ctctttttac putative PPT
tcttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcctagaagaaaatgattagaaataatcacaccaatttgactcgggttgcatcatgcctgtgatcatttcaacctataactgactggctctttttacagGTTACAGCTGTTAATCTTAGAGATGGAACCACGCTATCTGTGGACATGGTTGTGGTGGGAATTGGAATACGTCCAAATACAGGTTTGTTTGAAGGCCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - -aagaaaa
- - - - - - - - - -agaaataa
- - - - - - - - - - - - - -tcacacc
- - - - - - - - - - - - - - - - - - - - - - gggttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -catgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgactg