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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacctaacctattaggaaatttgtcatgtttaaattatctagaatgctcatgccatgtacttgatttgcttgaggtgctactttaaacttacatgggaatttctttccacatgtcttgcattgttactgcatttgaatgacatgtttattttcattggtttctcctgctgcattcacagACAATACAAGCTTCCCATGGCAAATATCATTCCTTTCCCCAAGAGTAATGATCCTTCTAGCGCTCCTGATTTCCCTCCTGGAAAACATGTTTTGGCGGTC

Basic information

species Glycine max
transcript GLYMA16G07460.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208166859|gb|GD960409.1|GD960409
EST:     GAAGTACTGGATGAGGAACCAGGCGATGATGAAGAAAGCAGTGGCCAAAG                         ACAATACAAGCTTCCCATGGCAAATATCATTCCTTTCCCCAAGAGTAATGA
genomic: GAAGTACTGGATGAGGAACCAGGCGATGATGAAGAAAGCAGTGGCCAAAGgtaacctaac ... gcattcacagACAATACAAGCTTCCCATGGCAAATATCATTCCTTTCCCCAAGAGTAATGA
EST: gi|207800304|gb|GD773685.1|GD773685
EST:     GAAGTACTGGATGAGGAACCAGGCGATGATGAAGAAAGCAGTGGCCAAAG                         ACAATACAAGCTTCCCATGGCAAATATCATTCCTTTCCCCAAGAGTAATGA
genomic: GAAGTACTGGATGAGGAACCAGGCGATGATGAAGAAAGCAGTGGCCAAAGgtaacctaac ... gcattcacagACAATACAAGCTTCCCATGGCAAATATCATTCCTTTCCCCAAGAGTAATGA
EST: gi|151405976|gb|EV275791.1|EV275791
EST:     GAAGTACTGGATGAGGAACCAGGCGATGATGAAGAAAGCAGTGGCCAAAG                         ACAATACAAGCTTCCCATGGCAAATATCATTCCTTTCCCCAAGAGTAATGA
genomic: GAAGTACTGGATGAGGAACCAGGCGATGATGAAGAAAGCAGTGGCCAAAGgtaacctaac ... gcattcacagACAATACAAGCTTCCCATGGCAAATATCATTCCTTTCCCCAAGAGTAATGA
EST: gi|208101773|gb|GD900644.1|GD900644
EST:     GAAGTACTAGATGAGGAACCAGGTGATGATGAAGAAAGCAGTGGCCAAAG                         ACAATACAAGCTTCCCATG
genomic: GAAGTACTGGATGAGGAACCAGGCGATGATGAAGAAAGCAGTGGCCAAAGgtaacctaac ... gcattcacagACAATACAAGCTTCCCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactgcatttgaatgacatgtttattttcattggtttctcctgctgcattcacagACAATACAAGCTTCCCATGGCAAATATCATTCCTTTCCCCAAGAGTAATGATCCTTCTAGCGCTCCTGATTTCCCTCCTGGAAAACATGTTTTGGCGGTC
                 atgtttattttcatt  TA-rich tract