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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtcatctcctcacctctgctgttgatacttcctgtcatttgattatatatttttacattcacttattttaaatcccatctttccagATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTG

Basic information

species Glycine max
transcript GLYMA16G07110.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G07110.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv14s0219g00120.t01 (Vitis vinifera), 3'ss of exon 6
gtttgtcatctcctcacctctgctgttgatacttcc---tgtcatttgattatatatttttacattcacttattttaaatcc---catctttccagATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTG
|| |||||| |  ||  ||      |||||||| ||   ||  ||||   ||   |  | |  ||   | | | | || ||      |  |||||||||| ||||| ||||||||||| |||||||||||  | ||||||||||||
gtgtgtcatttgttccactaccaaattgatactgccatctgaaatttatatactcacatgtgtatgaccatgtatgaactcaatgtcttcttccagATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294741|gb|FG986590.1|FG986590
EST:     TGGAGGAATAGCAAATTATGGACAGATGGTTGTGCAATCAATAGATCAAG                         ATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTG
genomic: TGGAGGAATAGCAAATTATGGACAGATGGTTGTGCAATCAATAGATCAAGgtttgtcatc ... atctttccagATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTG
EST: gi|254347046|gb|GR856716.1|GR856716
EST:     TGGAGGAATAGCAAATTATGGACAGATGGTTGTGCAATCAATAGATCAAG                         ATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTG
genomic: TGGAGGAATAGCAAATTATGGACAGATGGTTGTGCAATCAATAGATCAAGgtttgtcatc ... atctttccagATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTG
EST: gi|192313595|gb|FK005591.1|FK005591
EST:     TGGAGGAATAGCAAATTATGGACAGATGGTTGTGCAATCAATAGATCAAG                         ATTCATGGGTCAACTTCTATGGGGATATAGGAAAAGTGTTGCTATCTTTG
genomic: TGGAGGAATAGCAAATTATGGACAGATGGTTGTGCAATCAATAGATCAAGgtttgtcatc ... atctttccagATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTG
EST: gi|254327243|gb|GR836852.1|GR836852
EST:     TGGAGGAATAGCAAATTATGGACAGATGGTTGTGCAATCAATAGATCAAG                         ATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTG
genomic: TGGAGGAATAGCAAATTATGGACAGATGGTTGTGCAATCAATAGATCAAGgtttgtcatc ... atctttccagATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTG
EST: gi|192306920|gb|FG999953.1|FG999953
EST:     TGGAGGAATAGCAAATTATGGACAGATGGTTGTGCAATCAATAGATCAAG                         ATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTG
genomic: TGGAGGAATAGCAAATTATGGACAGATGGTTGTGCAATCAATAGATCAAGgtttgtcatc ... atctttccagATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTG
EST: gi|254327242|gb|GR836851.1|GR836851
EST:     TGGAGGAATAGCAAATTATGGACAGATGGTTGTGCAATCAATAGATCAAG                         ATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTG
genomic: TGGAGGAATAGCAAATTATGGACAGATGGTTGTGCAATCAATAGATCAAGgtttgtcatc ... atctttccagATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTG
EST: gi|151401800|gb|EV271613.1|EV271613
EST:     TGGAGGAATAGCAAATTATGGACAGATGGTTGTGCAATCAATAGATCAAG                         ATTCATGGGTCAACTTCTATGGGA-TATAGGAAAAGTGTTGCTATCTTTG
genomic: TGGAGGAATAGCAAATTATGGACAGATGGTTGTGCAATCAATAGATCAAGgtttgtcatc ... atctttccagATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTG
EST: gi|192306919|gb|FG999952.1|FG999952
EST:     TGGAGGAATAGCAAATTATGGACAGATGGTTGTGCAATCAATAGATCAAG                         ATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTGG
genomic: TGGAGGAATAGCAAATTATGGACAGATGGTTGTGCAATCAATAGATCAAGgtttgtcatc ... atctttccagATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTGG
EST: gi|192313596|gb|FK005592.1|FK005592
EST:     TGGAGGAATAGCAAATTATGGACAGATGGTTGTGCAATCAATAGATCAAG                         ATTCATGGGTCAACTTCTATGGG
genomic: TGGAGGAATAGCAAATTATGGACAGATGGTTGTGCAATCAATAGATCAAGgtttgtcatc ... atctttccagATTCATGGGTCAACTTCTATGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtcatttgattatatatttttacattcacttattttaaatcccatctttccagATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTG
     atttgat  putative branch site (score: 5)
                                         tcccatctttcc  putative PPT
     atttgattatatattt  TA-rich tract