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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgaattttgatttttgtttcaattattctcctttagttgagattccattttttaagctaggattaatcttgccccattaattacagATCTGCATTGTGTTTGGCCTATTGTTGATGATTTTATCACCAATTGGAGGATTGAGGTCAATCATAATTAGTGCCAAGGACTACAAGTTCTACTCATAAA

Basic information

species Glycine max
transcript GLYMA16G06750.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254330084|gb|GR839637.1|GR839637
EST:     TTGCGATCTACAAACCAAGGAGATTCAGCATGTCTTGGTGGGCCAACTGG                         ATCTGCATTGTGTTTGGCCTATTGTTGATGATTTTATCACCAATTGGAGGA
genomic: TTGCGATCTACAAACCAAGGAGATTCAGCATGTCTTGGTGGGCCAACTGGgtatgttgaa ... ttaattacagATCTGCATTGTGTTTGGCCTATTGTTGATGATTTTATCACCAATTGGAGGA
EST: gi|151401345|gb|EV271159.1|EV271159
EST:     TTGCGATCTACAAACCAAGGAGATTCAGCATGTCTTGGTGGGCCAACTGG                         ATCTGCATTGTGTTTGGCCTATTGTTGATGATTTTATCACCAATTGGAGGA
genomic: TTGCGATCTACAAACCAAGGAGATTCAGCATGTCTTGGTGGGCCAACTGGgtatgttgaa ... ttaattacagATCTGCATTGTGTTTGGCCTATTGTTGATGATTTTATCACCAATTGGAGGA
EST: gi|23731396|gb|BU763816.1|BU763816
EST:     TTGCGATCTACAAACCAAGGAGATTCAGCATGTCTTGGTGGGCCAACTGG                         ATCTGCATTGTGTTTGGCCTATTGTTGATGATTTTATCACCAATTGGAGGA
genomic: TTGCGATCTACAAACCAAGGAGATTCAGCATGTCTTGGTGGGCCAACTGGgtatgttgaa ... ttaattacagATCTGCATTGTGTTTGGCCTATTGTTGATGATTTTATCACCAATTGGAGGA
EST: gi|254343289|gb|GR856993.1|GR856993
EST:     TTGCGATCTACAAACCAAGGAGATTCAGCATGTCTTGGTGGGCCAACTGG                         ATCTGCATTGTGTTTGGCCTATTGTTGATGATTTTATCACCAATTGGAGGA
genomic: TTGCGATCTACAAACCAAGGAGATTCAGCATGTCTTGGTGGGCCAACTGGgtatgttgaa ... ttaattacagATCTGCATTGTGTTTGGCCTATTGTTGATGATTTTATCACCAATTGGAGGA
EST: gi|254314207|gb|GR831836.1|GR831836
EST:     TTGCGATCTACAAACCAAGGAGATTCAGCATGTCTTGGTGGGCCAACTGG                         ATCTGCATTGTGTTTGGCCTATTGTTGATGATTTTATCACCAATTGGAGGA
genomic: TTGCGATCTACAAACCAAGGAGATTCAGCATGTCTTGGTGGGCCAACTGGgtatgttgaa ... ttaattacagATCTGCATTGTGTTTGGCCTATTGTTGATGATTTTATCACCAATTGGAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagttgagattccattttttaagctaggattaatcttgccccattaattacagATCTGCATTGTGTTTGGCCTATTGTTGATGATTTTATCACCAATTGGAGGATTGAGGTCAATCATAATTAGTGCCAAGGACTACAAGTTCTACTCATAAA
                                           cattaat  putative branch site (score: 3)
                                        ccccatt  CT-rich tract
          attccattttttaa  TA-rich tract