1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atttagtactagttcatatatcattttgtccctataccgatgtactgatattgtgttcttaaacctttttttcatggctatgttcaaaataataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCCATGCCTAAAATGCTTAATGATGGTGCTGTGGAATATGAAGATGGTACTC
species | Glycine max |
transcript | GLYMA16G06700.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCG ATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCCEST: gi|192326638|gb|FK018855.1|FK018855
genomic: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattctt ... aataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
EST: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCG ATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCCEST: gi|192306424|gb|FG997164.1|FG997164
genomic: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattctt ... aataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
EST: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCG ATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCA-TTGCCEST: gi|254314652|gb|GR829645.1|GR829645
genomic: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattctt ... aataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
EST: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCG ATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCCEST: gi|151408312|gb|EV278120.1|EV278120
genomic: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattctt ... aataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
EST: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCG ATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCCEST: gi|151401029|gb|EV270843.1|EV270843
genomic: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattctt ... aataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
EST: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCG ATA-GAGAGGGACTTCATTATAATCEST: gi|151408267|gb|EV278075.1|EV278075
genomic: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattctt ... aataatgtagATAAGAGAGGGACTTCATTATAATC
EST: TGTTTTTGCCCTTCTGACTGGGTTATCGTGACCCACCTGCTGGTGTTTCG ATAAGAGAGGGACTTCATTATAATCCTTACTT
genomic: TGTTTTTGCCCTTCTGACTGG-TTATCGTGACCCACCTGCTGGTGTTTCGgtaaattctt ... aataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTT
tgatattgtgttcttaaacctttttttcatggctatgttcaaaataataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCCATGCCTAAAATGCTTAATGATGGTGCTGTGGAATATGAAGATGGTACTC
tactgat putative branch site (score: 2)
tatgttcaaaataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttagtactagttcatatatcattttgtccctataccgatgtactgatattgtgttcttaaacctttttttcatggctatgttcaaaataataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCCATGCCTAAAATGCTTAATGATGGTGCTGTGGAATATGAAGATGGTACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG