1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...taaagtgatataggatgttagagcatatagtgcatttatctgatgtgatattaaaagaaaatttgcatatacttattttgcttctttatggattgtgtagAAATATGCCAAATATGTTGGTCTTAAGAGGGATTTCCGTCTAGTAGTAAGAGGTGCTGCTCGTAACATGGTCCCCATTCTAAACGGGTCTG
species | Glycine max |
transcript | GLYMA16G05340.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGATAGTTCATGATGCTGTTTTTCGAGACAATGAGGCCCCTGTTAATGAG AAATATGCCAAATATGTTGGTCTTAAGAGGGATTTCCGTCTAGTAGTAAGA
genomic: TGATAG-TCATGATGCTGTTTTTCGAGACAATGAGGCCCCTGTTAATGAGgtaagcctgt ... gattgtgtagAAATATGCCAAATATGTTGGTCTTAAGAGGGATTTCCGTCTAGTAGTAAGA
tgatattaaaagaaaatttgcatatacttattttgcttctttatggattgtgtagAAATATGCCAAATATGTTGGTCTTAAGAGGGATTTCCGTCTAGTAGTAAGAGGTGCTGCTCGTAACATGGTCCCCATTCTAAACGGGTCTG
ttaaaagaaaatttgc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaagtgatataggatgttagagcatatagtgcatttatctgatgtgatattaaaagaaaatttgcatatacttattttgcttctttatggattgtgtagAAATATGCCAAATATGTTGGTCTTAAGAGGGATTTCCGTCTAGTAGTAAGAGGTGCTGCTCGTAACATGGTCCCCATTCTAAACGGGTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - ggatgtt
- - - - - - - - - - - gcatata
- - - - - - - - - - - - - - - tgcattt
- - - - - - - - - - - - - - - - - - - tctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatat