1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgccacttttattataattcactttgcttggaggcaaaatatggatttaacgattgttttttaagatctcagactgtaattgtatctttctacctgcagAGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAAACGTACTGCTTCAGAGATGGCTGATGTACTCTATCATGCCATGGTTCTG
species | Glycine max |
transcript | GLYMA16G05140.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGACAAGGCGATTATTGCTTAATGATAAGTTGCTATGCTCTAAAATCAG AGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAAEST: gi|26058540|gb|CA801454.1|CA801454
genomic: TGGACAAAGCGATTATTGCTTAATGATAAGTTGCTATGCTCTAAAATCAGgttgtgtata ... ctacctgcagAGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAA
EST: TGGACAAAGCGATTATTGCTTAATGATAAGTTGCTATGCTCTAAAATCAG AGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAAEST: gi|11413772|gb|BF425783.1|BF425783
genomic: TGGACAAAGCGATTATTGCTTAATGATAAGTTGCTATGCTCTAAAATCAGgttgtgtata ... ctacctgcagAGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAA
EST: TGGACAAAGCGATTATTGCTTAATGATAAGTTGCTATGCTCTAAAATCAG AGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAAEST: gi|19934822|gb|BQ079852.1|BQ079852
genomic: TGGACAAAGCGATTATTGCTTAATGATAAGTTGCTATGCTCTAAAATCAGgttgtgtata ... ctacctgcagAGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAA
EST: TGGACAAAGCGATTATTGCTTAATGATAAGTTGCTATGCTCTAAAATCA- AGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAAEST: gi|23056166|gb|BU577706.1|BU577706
genomic: TGGACAAAGCGATTATTGCTTAATGATAAGTTGCTATGCTCTAAAATCAGgttgtgtata ... ctacctgcagAGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAA
EST: TGGACAAAGCGATTATTGCTTAATGATAAGTTGCTATGCTCTAAAATCAG AGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAA
genomic: TGGACAAAGCGATTATTGCTTAATGATAAGTTGCTATGCTCTAAAATCAGgttgtgtata ... ctacctgcagAGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAA
atttaacgattgttttttaagatctcagactgtaattgtatctttctacctgcagAGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAAACGTACTGCTTCAGAGATGGCTGATGTACTCTATCATGCCATGGTTCTG
atttaac putative branch site (score: 3)
tctttctacct putative PPT
attgttttttaagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgccacttttattataattcactttgcttggaggcaaaatatggatttaacgattgttttttaagatctcagactgtaattgtatctttctacctgcagAGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAAACGTACTGCTTCAGAGATGGCTGATGTACTCTATCATGCCATGGTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT