1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaatatactcctttctgtctgcctaatgctattttgatgctaagttacattttggctcttttcttaacctttcattggtccacaaggaaaaagagctttgaattttttttaatattctttttcttcctgccttataattctgttaagtagctactttttttttaattttttttcttagGATCCTACAACTATGGAGGAAAGTCGTTTAAGGCTTCATCCGGCTCTTCTGGTGCAAGCTTAAATGAATGCAAAAGTGTTGCTCTTAGGGCTCTCAAAGT
species | Glycine max |
transcript | GLYMA16G04790.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAAGATTTCTGATGATGCTGAAAACCCTTGTGTCATATCTGGCTATGATG GATCCTACAACTATGGAGGAAAGTCGTTTAAGGCTTCATCCGGCTCTTCTGEST: gi|51337808|gb|CO981674.1|CO981674
genomic: AAAGATTTCTGATGATGCTGAAAACCCTTGTGTCATATCTGGCTATGATGgtaaatatac ... tttttcttagGATCCTACAACTATGGAGGAAAGTCGTTTAAGGCTTCATCCGGCTCTTCTG
EST: GATGATGCTGAAAACCCTTGTGTCATATCTGGCTATGATG GATCCTACAACTATGGAGGAAAGTCGTTTAAGGCTTCATCCGGCTCTTCTG
genomic: GATGATGCTGAAAACCCTTGTGTCATATCTGGCTATGATGgtaaatatac ... tttttcttagGATCCTACAACTATGGAGGAAAGTCGTTTAAGGCTTCATCCGGCTCTTCTG
ttcctgccttataattctgttaagtagctactttttttttaattttttttcttagGATCCTACAACTATGGAGGAAAGTCGTTTAAGGCTTCATCCGGCTCTTCTGGTGCAAGCTTAAATGAATGCAAAAGTGTTGCTCTTAGGGCTCTCAAAGT
ttttaat putative branch site (score: 3)
ctactttttttttaat CT-rich tract
ttaagtagctactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatatactcctttctgtctgcctaatgctattttgatgctaagttacattttggctcttttcttaacctttcattggtccacaaggaaaaagagctttgaattttttttaatattctttttcttcctgccttataattctgttaagtagctactttttttttaattttttttcttagGATCCTACAACTATGGAGGAAAGTCGTTTAAGGCTTCATCCGGCTCTTCTGGTGCAAGCTTAAATGAATGCAAAAGTGTTGCTCTTAGGGCTCTCAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT