1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtctaaatcctacaataattttttgctaaataaaagtaaaaaggcttaaaatttcaagtagatgccaataacatgtaaacaatatttctattctttaaagGGACCTACACATATTCGGGAGTTAAATATAAGGCCTTGGCCTCCACTTCTGGGTCCAATTTCGATAAATGTCGAGAGGTAGCTCTTAAAGCTCTGAAAGT
species | Glycine max |
transcript | GLYMA16G04760.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGGTCACTGGTGATTCAGCTAACCCTTGCATTTTAGCCCGGTTATAATG GGACCTACACAEST: gi|8403388|gb|BE059022.1|BE059022
genomic: AAGGTCACTGGTGATTCAGCTAACCCTTGCATTTTAGCC-GGTTATAATGgtaaacatat ... ttctttaaagGGACCTACACA
EST: GAAGGTCACTGGTGATTCAGCTAACCCTTGCATTTTAGCCGGTTATAATG GGACCTACACATATTCGGGAGTTAAATATAAGGCCTTGGCCTCCACTTCTG
genomic: GAAGGTCACTGGTGATTCAGCTAACCCTTGCATTTTAGCCGGTTATAATGgtaaacatat ... ttctttaaagGGACCTACACATATTCGGGAGTTAAATATAAGGCCTTGGCCTCCACTTCTG
ttaaaatttcaagtagatgccaataacatgtaaacaatatttctattctttaaagGGACCTACACATATTCGGGAGTTAAATATAAGGCCTTGGCCTCCACTTCTGGGTCCAATTTCGATAAATGTCGAGAGGTAGCTCTTAAAGCTCTGAAAGT
caataac putative branch site (score: 2)
tatttctattcttt putative PPT
atgtaaacaatatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctaaatcctacaataattttttgctaaataaaagtaaaaaggcttaaaatttcaagtagatgccaataacatgtaaacaatatttctattctttaaagGGACCTACACATATTCGGGAGTTAAATATAAGGCCTTGGCCTCCACTTCTGGGTCCAATTTCGATAAATGTCGAGAGGTAGCTCTTAAAGCTCTGAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - -tcctaca
- - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - agtaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtaa