1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agcattagctatatagatggtaaagaactgctgaaagaagttcttgaatttagtattatgatgaatttgacataaactcatatattgtgtatttcttcagGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTAATAAAGGTGGAAAAGTTGTTGCTGTGAGTGACATAACTGGAGCCATAAAGAACAGCA
species | Glycine max |
transcript | GLYMA16G04560.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAG GGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTAATAAAGGTEST: gi|192308765|gb|FG999790.1|FG999790
genomic: TGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGgtacttgttg ... atttcttcagGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTAATAAAGGT
EST: TGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAG GGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTAATAAAGGTEST: gi|12496130|gb|BG046909.1|BG046909
genomic: TGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGgtacttgttg ... atttcttcagGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTAATAAAGGT
EST: TGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAG GGTTTTGAAAATGTACGGTCATGGGCTGCCCAATTAATTAGTAATAAAGGTEST: gi|26058522|gb|CA801436.1|CA801436
genomic: TGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGgtacttgttg ... atttcttcagGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTAATAAAGGT
EST: TGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAG GGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTAATAAAGGTEST: gi|208192091|gb|GD992389.1|GD992389
genomic: TGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGgtacttgttg ... atttcttcagGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTAATAAAGGT
EST: TGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAG GGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATEST: gi|4396467|gb|AI495464.1|AI495464
genomic: TGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGgtacttgttg ... atttcttcagGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAAT
EST: TGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAG GGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTAATAAAGGTEST: gi|6070029|gb|AW099659.1|AW099659
genomic: TGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGgtacttgttg ... atttcttcagGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTAATAAAGGT
EST: TGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAG GGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTAATAAAGGTEST: gi|151413195|gb|EV283003.1|EV283003
genomic: TGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGgtacttgttg ... atttcttcagGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTAATAAAGGT
EST: GTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAG GGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTAATAAAGGT
genomic: GTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGgtacttgttg ... atttcttcagGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTAATAAAGGT
gaatttagtattatgatgaatttgacataaactcatatattgtgtatttcttcagGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTAATAAAGGTGGAAAAGTTGTTGCTGTGAGTGACATAACTGGAGCCATAAAGAACAGCA
atttgac putative branch site (score: 4)
tatttcttc putative PPT
tattatgatgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcattagctatatagatggtaaagaactgctgaaagaagttcttgaatttagtattatgatgaatttgacataaactcatatattgtgtatttcttcagGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTAATAAAGGTGGAAAAGTTGTTGCTGTGAGTGACATAACTGGAGCCATAAAGAACAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC