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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagtctttctaccagcttttggcatcaacttggaaatatatttattttgtcgtctagtaaaaattcttacaaatctcaaatttgcacttggatgccatgctttcagGCATGGGCGCGGCTTTGCAAGTGCCTTGGGCAGGATTTTCTCCCATACATGGGTTTTGTCATGCCTCCTTTGCTCCAGTCTGCGCAACTTAAGCCCGATG

Basic information

species Glycine max
transcript GLYMA16G04400.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G04400.2 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G033619_T01 (Zea mays), 3'ss of exon 5
gtatagtctttctaccagcttttggcatcaacttggaaatatatttattttgtcgtctagtaaaaattcttacaaatctcaaatttgcacttggatgc-catgctttcagGCATGGGCGCGGCTTTGCAAGTGCCTTGGGCAGGATTTTCTCCCATACATGGGTTTTGTCATGCCTCCTTTGCTCCAGTCTGCGCAACTTAAGCCCGATG
          | |   ||   |||  | |   ||   ||    ||| |||||||   |  ||||  || ||       ||  ||||| |  |  |||  |     |  ||||||||||  | || || || |||||||| ||||||||  | ||||||||| || |||| ||||| ||| ||||||||||||| || || || || ||||
---------gtatgttagaacttgaaaccttgttctcaac---ttttttttgtcaatt--taaatcttttt------ttctcatttg-atctatatgttcgcctctgtagGCATGGGCAAGACTGTGTAAATGCCTTGGTCAGGATTTCTTACCATACATGAGTGTTGTTATGCCCCCTCTGCTCCAGTCTGCTCAGCTCAAACCAGATG

upper sequence: GLYMA16G04400.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0007g07240.t01 (Vitis vinifera), 3'ss of exon 6
--------------------------------gtatagtctttctaccagcttttggcatcaacttggaaatatatttat-----tttgtcgtctagtaaa-aattctt---acaaatctcaaatttg-----cacttgga-------------------tgccatgctttcagGCATGGGCGCGGCTTTGCAAGTGCCTTGGGCAGGATTTTCTCCCATACATGGGTTTTGTCATGCCTCCTTTGCTCCAGTCTGCGCAACTTAAGCCCGATG
                                   ||    |||| |     |||| | |  |  |||| | ||  |||       || | |||||  ||| |||| ||   | || |||    | |      || ||  |                   | || |  || |||||||||||  | ||||||||||||||||| |||||||| || || ||||||  | |||||||||| || ||||| || ||||| || |||||||| ||||
gtatgctttttgcataagctacagagaccttcacttaaatgttctgcatttctttgtcttttaaatggacaaatgcttaggaatactttttgtctaacaaacaatttttttgataagtcttttgtctaacaaacaattaaaaagaacaaaacataatatgtacctttgttgcagGCATGGGCCAGACTTTGCAAGTGCCTTGGCCAGGATTTCCTTCCTTACATGAATGTTGTCATGCCCCCCTTGCTTCAATCTGCTCAGCTTAAGCCTGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctagtaaaaattcttacaaatctcaaatttgcacttggatgccatgctttcagGCATGGGCGCGGCTTTGCAAGTGCCTTGGGCAGGATTTTCTCCCATACATGGGTTTTGTCATGCCTCCTTTGCTCCAGTCTGCGCAACTTAAGCCCGATG
            ttcttac  putative branch site (score: 2)
                                              tgctttc  putative PPT
      taaaaattcttacaaa  TA-rich tract