1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaattgcttatcattcatgctaaataactaacaagttccttgcacatgtatatgaatgaatatgcattcgcacgaccagcatatactgcctttttatgatatttatttatgggacttcgaatcatttcagGTCCGCCAGACGCATTTAGTTGCCCCATTGGACAAACATTTCTCTTTACTGTATGTTCTTCTGAAGGACCACATTGCAGATGATGTTGATTACAAG
species | Glycine max |
transcript | GLYMA16G02880.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGAATTTATCAATACAGTGCAAGAGGGAACTGAGGAGACACATTCACAG GTCCGCCAGACEST: gi|15814026|gb|BI786301.1|BI786301
genomic: ATGAATTTATCAATACAGTGCAAGAGGGAACTGAGGAGACACATTCACAGgtaattgctt ... atcatttcagGTCCGCCAGAC
EST: ATGAATTTATCAATACAGTGCAAGAGGGAACTGAGGAGACACATTCACAG GTCCGCCAGACGCATTTAGTTGCCCCATTGGACAAACATTTCTCTTTACTG
genomic: ATGAATTTATCAATACAGTGCAAGAGGGAACTGAGGAGACACATTCACAGgtaattgctt ... atcatttcagGTCCGCCAGACGCATTTAGTTGCCCCATTGGACAAACATTTCTCTTTACTG
ccagcatatactgcctttttatgatatttatttatgggacttcgaatcatttcagGTCCGCCAGACGCATTTAGTTGCCCCATTGGACAAACATTTCTCTTTACTGTATGTTCTTCTGAAGGACCACATTGCAGATGATGTTGATTACAAG
tcatttc CT-rich tract
tttttatgatatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgcttatcattcatgctaaataactaacaagttccttgcacatgtatatgaatgaatatgcattcgcacgaccagcatatactgcctttttatgatatttatttatgggacttcgaatcatttcagGTCCGCCAGACGCATTTAGTTGCCCCATTGGACAAACATTTCTCTTTACTGTATGTTCTTCTGAAGGACCACATTGCAGATGATGTTGATTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG