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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataactattctattatgatggcaatgatggatatgatgatgagatgcacatcattttaatccttttccttttaattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATTACAAATACAATGATGAGAACACAGTTTCCTTTGTTACGTTAAACAAGGT

Basic information

species Glycine max
transcript GLYMA16G00360.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00360.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv12s0035g01130.t01 (Vitis vinifera), 3'ss of exon 7
-----------------gtataactattctattatgatggcaatgatggatatgatgatgagatgcacatcattttaatccttttccttttaattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATTACAAATACAATGATGAGAACACAGTTTCCTTTGTTACGTTAAACAAGGT
                  |||   |  ||| || |  |     | ||   |       | | |     |   |   |||   | |  |  | ||| ||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||| || || || || || ||  | ||||||||
gcctagttgataagttgctatggttgctctgtt-ttctacttctcattcttcaaggtttaaaactttgaagttcacaatgaatatgttcatgattatgcagGATTCTGGGACATGTACGATCCCGAGGGATACTCTCTTTGGTTCTGTGATTACAAATACAATGACGAGAATACCGTCTCATTCGTAACTCTGAACAAGGT

upper sequence: GLYMA16G00360.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv12s0035g01120.t01 (Vitis vinifera), 3'ss of exon 3
-----------------gtataactattctattatgatggcaatgatggatatgatgatgagatgcacatcattttaatccttttccttttaattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATTACAAATACAATGATGAGAACACAGTTTCCTTTGTTACGTTAAACAAGGT
                  |||   |  ||| || |  |     | ||   |       | | |     |   |   |||   | |  |  | ||| ||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||  ||||| || || || || || ||  | | ||||||
gcctagttgataagttgctatggttgctctgtt-tactacttctcattcttcaaggtttaaaactttgaagttcacaatgaatatgttcatgattatgcagGATTCTGGGACATGTACGATCCCGAGGGATACTCTCTTTGGTTCTGTGATTACAAATACAATGCCGAGAATACCGTCTCATTCGTAACTCTGATCAAGGT

upper sequence: GLYMA16G00360.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S172_22V6.1 (Physcomitrella patens), 3'ss of exon 5
------------------------------gtataactattctattatgatg-gcaatgatggatatgatga------tgagatgcacatcattttaatccttttcct---tttaattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATTACAAATACAATGATGAGAACACAGTTTCCTTTGTTACGTTAAACAAGGT
                               || | |     | | ||  || |||   |||  ||||  ||      |||    |   |  |  |||     |       || ||| |  ||||||| ||||| |||| |||| | ||||| |  ||  ||||||||||||||||||| |||||||||||||||  |||  | || || ||  | || |||||
gtacgtcttctaatgagcatatgatttaatttagagcctcagtctgatactgagcacccatgcttatggagaatgtcttgaccctcggcttgtgctaacgtggtggacgggttgaatatgccagGATTCTGGGAAATGTTCGATGCTGAGGGTTGGTCATTGTGGTTCTGTGATTACAAGTACAATGATGAGAACCAAGTCACTTTCGTGACCATGAATAAGGT

upper sequence: GLYMA16G00360.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S33_218V6.1 (Physcomitrella patens), 3'ss of exon 6
-----gtataactattctattatgatggcaatgatggatatgatgatgagatgcacatc--------attttaatccttttcctt---ttaattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATTACAAATACAATGATGAGAACACAGTTTCCTTTGTTACGTTAAACAAGGT
      | ||   |||||| | ||  |     ||  | |    | |||    | || |         ||  | | |   ||   |   |  || | |||||||| ||||| |||| |||  | || || || ||| ||||||||||||||||||| |||||||| ||||||  |||  ||||||| ||  | || || ||
gcactttttagtcattctagtctgcagagtcagagtgtttctctcatgtctcggacgtttggggctgatagtgagctaatttggtggttgtatgtggcagGATTCTGGGAAATGTTCGACGCTGAAGGTTACTCTTTGTGGTTCTGTGATTACAAGTACAATGACGAGAACCAAGTAACCTTTGTGACTATGAATAAAGT

upper sequence: GLYMA16G00360.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S71_218V6.1 (Physcomitrella patens), 3'ss of exon 7
----------------------------------------gtataactattctattatgatggcaatgatggatatgatga-tgagatgcacatcatttta-atcctt-------ttccttttaattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATTACAAATACAATGATGAGAACACAGTTTCCTTTGTTACGTTAAACAAGGT
                                        ||   || |||  || ||  | ||| | ||   | |    | |||   |    |||| |||  | | |       |||  || | |    |||| |||||||| |||| |||| | ||||| |  ||  ||||||||||||||||||||||||| |||||||||  |||  | ||||| ||  | ||||||||
gtaagtttctattaatgaactcatgatttgagttatggttgtggcacaatttaatgat--ttgcactcattcttttcgcaaatgattggtgtctcatcttatgttcatgtggtggttctgttgagtgcaacagGTTTTTGGGAAATGTTCGATGCTGAGGGTTGGTCATTGTGGTTCTGTGATTACAAATACAACGATGAGAACCAAGTAACATTTGTGACTATGAACAAGGT

upper sequence: GLYMA16G00360.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S132_188V6.1 (Physcomitrella patens), 3'ss of exon 6
------gtataactattct--attatga---tggcaatgatggatatgatgatgagatgcacatcattttaatccttttccttttaatt-----ttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATTACAAATACAATGATGAGAACACAGTTTCCTTTGTTACGTTAAACAAGGT
      | ||    | |||  |||  ||   || |    | |    |||   | | ||      |     | |  | || ||  | |||     |  |||| || ||||| |||| |||| | || || || ||  ||||||||||||||||||| ||||||||||| |||  |||| | ||||| ||  | ||||||||
gtttttgaatctgcactctggatttcgaaaatgccctctacgttcctgaaatttaaatttgtgccgacccattaatattgctgatgattgcttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATTACAAGTACAATGATGAAAACCAAGTTACGTTTGTGACCATGAACAAGGT

upper sequence: GLYMA16G00360.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ14564 (Selaginella moellendorffii), 3'ss of exon 6
gtataactattctattatgatggcaatgatggatatgatgatgagatgcacatcattttaatccttttccttttaattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATTACAAATACAATGATGAGAACACAGTTTCCTTTGTTACGTTAAACAAGGT
                    |   | || ||  |    ||||    || | ||     | ||  |  |||    |  ||||||||||| ||||| ||||| || || |||||||| || ||||||||||| || ||||| ||||| ||||||||||| ||  | || || ||| | ||||||||
-------------------gtacaagtggtgtttccattgatcgcttgaaaatg---ctgattttgatcccaa-atctttgcagGATTCTGGGAGATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACTACAAGTACAACGATGAGAACACGGTGCCTTTCGTGACGATGAACAAGGT

upper sequence: GLYMA16G00360.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ26267 (Selaginella moellendorffii), 3'ss of exon 5
gtataactattctattatgatggcaatgatggatatgatgatgagatgcacatcattttaatccttttccttttaattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATTACAAATACAATGATGAGAACACAGTTTCCTTTGTTACGTTAAACAAGGT
                    |   | || ||  |    ||||    || | ||     | || ||  ||  ||     |||||||||| ||||||||||| || || |||||||| || ||||||||||| || ||||| ||||| ||||||||||| ||  | || || ||| | ||||||||
-------------------gtacaagtggtgtttccattgatcgcttgaaaatg---ctgattctgatctcttc--ccttgcagGATTCTGGGACATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACTACAAGTACAACGATGAGAACACGGTGCCTTTCGTGACGATGAACAAGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205689|gb|BU964942.1|BU964942
EST:     GACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: GACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|151395544|gb|EV265421.1|EV265421
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGA
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGA
EST: gi|254314134|gb|GR831763.1|GR831763
EST:     CCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: CCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|208280396|gb|GE074546.1|GE074546
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|192332371|gb|FK026036.1|FK026036
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|254348583|gb|GR852262.1|GR852262
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|208330822|gb|GE131773.1|GE131773
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGG-ATATTCTCTGTGGT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGT
EST: gi|192295362|gb|FG986016.1|FG986016
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGATATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|208087298|gb|GD886464.1|GD886464
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGT
EST: gi|193539978|gb|FK496988.1|FK496988
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGGTT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|298166302|gb|HO009273.1|HO009273
EST:     TGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: TGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|192316481|gb|FK006772.1|FK006772
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|207832879|gb|GD801287.1|GD801287
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|254343640|gb|GR857396.1|GR857396
EST:     AGACTCTACTCAAACACCAAGACCAACTTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AGACTCTACTCAAACACCAAGACCAAC-TTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|192316480|gb|FK006771.1|FK006771
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         -ATTTTGGGACATGTACGATCCAGAGG-ATATTCTCTGTGGTTCTGTGAT-
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|7685661|gb|AW756309.1|AW756309
EST:     AAGACTCTACTCANACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCCAGAGG-ATATTCTCTGTGGTTCTGTGAT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCC-AGAGGGATATTCTCTGTGGTTCTGTGAT
EST: gi|208096426|gb|GD893799.1|GD893799
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGNTNTTCTCTGTGGT
genomic: A-GACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGT
EST: gi|208087985|gb|GD886087.1|GD886087
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGT
EST: gi|254348584|gb|GR852263.1|GR852263
EST:     AACACCAAGACCAACTTCCGCGAGG-TGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|192329460|gb|FK021858.1|FK021858
EST:     AAGACTCTACTCAA-CACCAAGAC-AACTTCCGCGAGGTTGCAATCAAAG                         -ATTTTGGGACATGTACGATCCAGAGG-ATATTCTCTGTGGT-CTGTGAT-
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|193334099|gb|FK297511.1|FK297511
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATAATTCTCTGTGGTT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATA-TTCTCTGTGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggatatgatgatgagatgcacatcattttaatccttttccttttaattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATTACAAATACAATGATGAGAACACAGTTTCCTTTGTTACGTTAAACAAGGT
                                         ttttaat  putative branch site (score: 3)
                                tccttttccttttaat  CT-rich tract
                                   ttttccttttaatttt  TA-rich tract