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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtttatttaaatatcgtagttttgtcttgctttgcctattgcttttgcttccacggagattataatggttcaactttctgggtggttcagGATCACGATGGTTCCCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTACTAAAAGTTCCATCTTTTATGGTTGAATTTACCA

Basic information

species Glycine max
transcript GLYMA15G43170.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G43170.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os02g47150.1 (Oryza sativa), 3'ss of exon 6
gtgggtttatttaaatatcgtagttttgtcttgctttg-cctattgcttttgcttccacggagatta--taatggttcaactttctgggtggttcagGATCACGATGGTTCCCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTACTAAAAGTTCCATCTTTTATGGTTGAATTTACCA
                       |||| || ||||     ||||| |   |  |   ||  |  |    |  | | ||| ||    |     ||||||| || |||||||||||||||||||| || ||||| ||||||||||| || |||||||| || ||  | ||| |||| |||||  ||||||| ||||  |
---------------------gtttttctcatgctaaaatctatttcaactagtctaactcaactcgcttttttgctcatctaatagaaaatttcagGACCATGATGGTTCCCACATCAAAGGCCTGTTGATCAACTTCATTCACTCCTTCTGGCCTTCTCTTATTAAAATTCCTTCTTTCTTGGTTGAGTTTATTA

upper sequence: GLYMA15G43170.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G021270_T02 (Zea mays), 3'ss of exon 6
gtgggtttatttaaatatcgtagttttgtcttgctttgcctattgcttttgcttccacggagatta-taatggttcaactttctgggtggttcagGATCACGATGGTTCCCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTACTAAAAGTTCCATCTTTTATGGTTGAATTTACCA
         |||      |    | |    ||  | |  | | |  |    ||        | ||  | ||| ||  ||           || ||||||| ||||| |||||||| |||||| |  |||| |||||||| || || |||||||| || || || ||||||||||||||| ||||||| || |  |
--------gtttggcaggcaacatctccaatt-ttatatcaactaatgaaactcaagttttgtttgctcatgctttgacacc----aaaatttagGATCATGATGGCTCCCACATTAAAGGGTTGCTGATCAACTTCATCCACTCATTCTGGCCGTCTCTTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTA

upper sequence: GLYMA15G43170.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv13s0064g00560.t01 (Vitis vinifera), 3'ss of exon 6
------------------gtgggtttatttaaatatcgtagttttgtcttgctttgcctattgcttt-tgcttccacggagattataatggttcaactttctgggtggttcagGATCACGATGGTTCCCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTACTAAAAGTTCCATCTTTTATGGTTGAATTTACCA
                  ||     |  || | |  || | | || |    ||||||| || |  |  |       |   | | | | | ||| |  ||  |   |    |||||||| ||||| || ||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||| ||||||||||  | ||||| || |  |
gttggccaaacaattccagttttcctgctttacttgcg-actgttattggcctttgccaatagagtaatatgagtccttggttaacagtagttta-tttcttctcttacacagGATCATGATGGCTCTCACATCAAAGGACTATTGATAAATTTCATTCATTCATTCTGGCCTTCACTGCTAAAAATTCCATCTTTCTTAGTTGAGTTCATAA

upper sequence: GLYMA15G43170.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S109_208V6.1 (Physcomitrella patens), 3'ss of exon 8
-------------------------------------------------------------------------gtgggtttatttaaatatcgtagttttg--tcttgctttgc-ctattgcttttgcttcca-cggagattataatggttcaacttt---ctgggtggtt-cagGATCACGATGGTTCCCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTACTAAAAGTTCCATCTTTTATGGTTGAATTTACCA
                                                                          ||| ||   ||  || |    | || |  | |  ||||   || | ||  | ||| |||   |    || ||||  | | |||     ||  || |  |||||||||||||| ||||||||||||||  | ||||| ||||| ||||| || |||||||| ||||| || ||  |||| || ||| | || || || | ||
gtgtgccatttctgccgacattaaacatgattgtgtttcatgtaactgtggaccaagtatctctcttaatcttttggattctcttgcatgttcctgcttagattatctctttatactgtagcgctggctgccagttgtcggtacaatgcatgaccttcagcttgtatgttcgcagGATCACGATGGGTCCCACATCAAAGGATTGTTGATTAACTTTATTCACTCTTTCTGGCCGTCACTGCTCAAGATTCCTTCGTTTCTTGTGGAGTTCATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattgcttttgcttccacggagattataatggttcaactttctgggtggttcagGATCACGATGGTTCCCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTACTAAAAGTTCCATCTTTTATGGTTGAATTTACCA
                     agattataat  TA-rich tract