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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaagctctttgatgctttaaaatctgatacttgaaacttctataaaatttgatgtacttgatcactagtaactgaagactctaccctttttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATCATTGGAGGAGGTGACTCCGTTGCCGCTGTGGAGAAGGTTGGACTTGCAG

Basic information

species Glycine max
transcript GLYMA15G41550.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G41550.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G79550.1 (Arabidopsis thaliana), 3'ss of exon 5
--------------------------------------------------aaaagctctttg--------atgctttaaaatctgatacttgaaacttctataaaatttgatgtacttgatcactagtaactgaagactctaccctttttgtgca-cagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATCATTGGAGGAGGTGACTCCGTTGCCGCTGTGGAGAAGGTTGGACTTGCAG
                                                   ||| |  ||||        ||| ||   ||||   |   |  ||| | | |   | | |  | |    | |   | ||||  ||     |  | | |||   || |||||  |||| ||| | || ||||| || || || |||||||| || || |||||||||||||||||||| ||||| || || |||||||||||  | ||||
gtatgagcaactaaacacatataaacacaagttttagtctcacttttgtctaaatccatttgtcttcaacatgtttgttaatcatctgtcttcaacatgtttgttaatcggagaaacccaacttaactaacccaatctcttgtcttgtttcaccatcagGCCGTAGCAAAGCAGCTTGCAGAACTAAGCGGAAAGGGAGTAACCACAATCATTGGAGGAGGTGACTCTGTTGCTGCCGTCGAGAAGGTTGGTTTGGCAG

upper sequence: GLYMA15G41550.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv19s0085g00370.t01 (Vitis vinifera), 3'ss of exon 5
aaaagctctttgatgctttaaaat--ctgatacttgaaacttctataaaatttgatgtacttgatcacta-gta-actgaagactctaccctttttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATCATTGGAGGAGGTGACTCCGTTGCCGCTGTGGAGAAGGTTGGACTTGCAG
   |    ||  |||||   |     ||   |    |     | |  ||  |  ||   |||| |   || ||  | ||| || | |  | | |       ||||| |||||||||||  ||||||| || |||| |||||| |||||||| || || ||||| ||||| || ||||| ||||| ||||||||||| || || |
---aatatttcaatgctacgatgctgctacaagcctatttcaccaggaagctcaattaccttgctttgtaagtgtattgaggattat-tcttctccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAATCGGAGGTGGTGATTCTGTTGCTGCTGTAGAGAAGGTTGGGCTCGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254319186|gb|GR830534.1|GR830534
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|5606153|gb|AI900251.1|AI900251
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|254340233|gb|GR858358.1|GR858358
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|207745279|gb|GD714527.1|GD714527
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCA
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCA
EST: gi|21639021|gb|BM140067.1|BM140067
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|209723638|gb|BW662546.1|BW662546
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|254343943|gb|GR857699.1|GR857699
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|58022166|gb|CX708907.1|CX708907
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|18038916|gb|BM307210.1|BM307210
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|51334886|gb|CO978752.1|CO978752
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|14125395|gb|BG789833.1|BG789833
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|192322343|gb|FK014584.1|FK014584
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|209717611|gb|BW679691.1|BW679691
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|209700686|gb|BW670462.1|BW670462
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|193479010|gb|FK444565.1|FK444565
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|193467533|gb|FK431302.1|FK431302
EST:     TGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: TGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|16341815|gb|BI967410.1|BI967410
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|21594814|gb|BQ610276.1|BQ610276
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|213596149|gb|DB977511.1|DB977511
EST:     TTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: TTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|254335486|gb|GR847014.1|GR847014
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|209726276|gb|BW659602.1|BW659602
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|254333390|gb|GR841252.1|GR841252
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|192307310|gb|FK001268.1|FK001268
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|209706843|gb|BW653135.1|BW653135
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|193489954|gb|FK454631.1|FK454631
EST:     TTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: TTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|6847800|gb|AW350090.1|AW350090
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|213595776|gb|DB981484.1|DB981484
EST:     TGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: TGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|208181485|gb|GD975032.1|GD975032
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|15285378|gb|BI469269.1|BI469269
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|254333428|gb|GR841290.1|GR841290
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|24136817|gb|BU927327.1|BU927327
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|254335644|gb|GR847172.1|GR847172
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|27424751|gb|CA936271.1|CA936271
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAA
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAA
EST: gi|15663915|gb|BI701286.1|BI701286
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|58022425|gb|CX709166.1|CX709166
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|209717629|gb|BW653991.1|BW653991
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|254335643|gb|GR847171.1|GR847171
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|254343176|gb|GR859338.1|GR859338
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
EST: gi|254328699|gb|GR833071.1|GR833071
EST:     ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG                         GCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaataa ... ttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatttgatgtacttgatcactagtaactgaagactctaccctttttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATCATTGGAGGAGGTGACTCCGTTGCCGCTGTGGAGAAGGTTGGACTTGCAG
                     tagtaac  putative branch site (score: 1)
                                  ctctaccctttttgt  putative PPT
                                          tttttgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaaagctctttgatgctttaaaatctgatacttgaaacttctataaaatttgatgtacttgatcactagtaactgaagactctaccctttttgtgcacagGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATCATTGGAGGAGGTGACTCCGTTGCCGCTGTGGAGAAGGTTGGACTTGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - tgatgct
- - - - - - - - - - - - ctgatac
- - - - - - - - - - - - - - - - - - - - - - - - - tgatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaactg