1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttcaggatccattaaccatcagccctttcaaacaattatttcttctgctaacattgatcaacaggtggaagttatatctgataataattgaaatttgcagGAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGG
species | Glycine max |
transcript | GLYMA15G41330.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAA GAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGEST: gi|209699717|gb|BW652089.1|BW652089
genomic: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAAgtatggtata ... aaatttgcagGAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAG
EST: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAA GAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGEST: gi|4295815|gb|AI442386.1|AI442386
genomic: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAAgtatggtata ... aaatttgcagGAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAG
EST: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAA GAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGEST: gi|38192385|gb|CF921591.1|CF921591
genomic: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAAgtatggtata ... aaatttgcagGAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAG
EST: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAA GAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGEST: gi|193487275|gb|FK451822.1|FK451822
genomic: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAAgtatggtata ... aaatttgcagGAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAG
EST: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAA GAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGEST: gi|151401084|gb|EV270898.1|EV270898
genomic: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAAgtatggtata ... aaatttgcagGAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAG
EST: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAA GAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGEST: gi|19345956|gb|BM890836.1|BM890836
genomic: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAAgtatggtata ... aaatttgcagGAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAG
EST: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAA GAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGEST: gi|38193672|gb|CF922878.1|CF922878
genomic: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAAgtatggtata ... aaatttgcagGAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAG
EST: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAA GAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGEST: gi|192305316|gb|FG994012.1|FG994012
genomic: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAAgtatggtata ... aaatttgcagGAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAG
EST: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAA GAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGEST: gi|13562525|gb|BG550745.1|BG550745
genomic: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAAgtatggtata ... aaatttgcagGAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAG
EST: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAA GAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGNTGTAATGCAGEST: gi|213617097|gb|DB963570.1|DB963570
genomic: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAAgtatggtata ... aaatttgcagGAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAG
EST: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAA GAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGEST: gi|12688265|gb|BG154601.1|BG154601
genomic: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAAgtatggtata ... aaatttgcagGAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAG
EST: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAA GAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAG
genomic: TGGTTCGAAAAAGCAGGAAACAAGCCGAGCAGTATCATCGGTTATATAAAgtatggtata ... aaatttgcagGAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAG
tgctaacattgatcaacaggtggaagttatatctgataataattgaaatttgcagGAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGG
aagttatatctgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcaggatccattaaccatcagccctttcaaacaattatttcttctgctaacattgatcaacaggtggaagttatatctgataataattgaaatttgcagGAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGG
- - - - - - - accatca
- - - - - - - - - - - ccctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - atcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtggaa