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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctttaaatattaagtttttgtgcctttgattttggaagtgtgtatatgcgtttctctatcttttttgtttccaggtgatgataagatatgtattttctcaattgatttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAGAGGTTCTCGGATATGCCTCCAAGGTGGTTCTCACCAAGGATACAACCAC

Basic information

species Glycine max
transcript GLYMA15G40110.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193593269|gb|FK548909.1|FK548909
EST:     TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tgatttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|16278868|gb|BI943136.1|BI943136
EST:     TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tgatttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|193629072|gb|FK576466.1|FK576466
EST:     GGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: GGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tgatttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|16278211|gb|BI942785.1|BI942785
EST:     TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tgatttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|209696896|gb|BW660461.1|BW660461
EST:     TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTG
genomic: TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tgatttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTG
EST: gi|6481406|gb|AW200677.1|AW200677
EST:     TGGAGAGCGCAAGAGCCAGTACC-TGATGATATTGCCATCCTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tgatttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|208146316|gb|GD948421.1|GD948421
EST:     CGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: CGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tgatttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|26046015|gb|CA783382.1|CA783382
EST:     TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tgatttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|207757511|gb|GD729685.1|GD729685
EST:     TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tgatttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|298192668|gb|HO033102.1|HO033102
EST:     TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGGGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tgatttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|24135545|gb|BU926055.1|BU926055
EST:     TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGGCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tgatttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|208317500|gb|GE114867.1|GE114867
EST:     GCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: GCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tgatttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|16276840|gb|BI942072.1|BI942072
EST:     TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tgatttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|193624222|gb|FK573374.1|FK573374
EST:     TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGG
genomic: TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tgatttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGG
EST: gi|208230249|gb|GE031696.1|GE031696
EST:     CCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAGG
genomic: CCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tgatttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|17400588|gb|BM177370.1|BM177370
EST:     TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tgatttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|208294352|gb|GE093051.1|GE093051
EST:     CATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: CATCTTGACTGGAGgtctttaaat ... tgatttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttttttgtttccaggtgatgataagatatgtattttctcaattgatttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAGAGGTTCTCGGATATGCCTCCAAGGTGGTTCTCACCAAGGATACAACCAC
                                          aattgat  putative branch site (score: 4)
                       ataagatatgtatttt  TA-rich tract