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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttacgttgcaataatgttgtatttatatttaatatggtgtcttctattagaaattatttattttattttatttgtctgcagAGTGCTGGGAGTTATTCTTTCTCCATAGGAATTACAGAGGTTCTTAATACAAACCTTGTGCTAGAATTAAGTGCGAATGATGTAGAGTATGTTTATCAAA

Basic information

species Glycine max
transcript GLYMA15G38410.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G38410.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv02s0025g04090.t01 (Vitis vinifera), 3'ss of exon 9
gttacgttgcaataatgttgtattt-atatttaatatggtgtcttctattagaaattatttattttattttatttgtctgcagAGTGCTGGGAGTTATTCTTTCTCCATAGGAATTACAGAGGTTCTTAATACAAACCTTGTGCTAGAATTAAGTGCGAATGATGTAGAGTATGTTTATCAAA
|||| ||| ||  ||  ||| |||| |||| ||   || |   | ||||| | | || |  |     |  |||||   |||||| ||||||||     || |||||||||||||| || ||||||||||||||||||||  || | ||| |||||||  ||||| |||| ||||| ||||| |
gttatgtttcaggaaatttggatttcatatctacattgat--ttactatttggattt-taaaccacttgctattt-catgcagAATGCTGGGACACGATCATTCTCCATAGGAATCACCGAGGTTCTTAATACAAACCTGTTGATTGAACTAAGTGCTGATGATATAGAATATGTATATCAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttaatatggtgtcttctattagaaattatttattttattttatttgtctgcagAGTGCTGGGAGTTATTCTTTCTCCATAGGAATTACAGAGGTTCTTAATACAAACCTTGTGCTAGAATTAAGTGCGAATGATGTAGAGTATGTTTATCAAA
 atttaat  putative branch site (score: 4)
                                       ttttattt  putative PPT
           tgtcttctattagaaa  TA-rich tract