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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtggtttttgaataccgtatccaaatcaaattgatgaatgatcaacatcactttattttgtctgagttctctcaattttacactttgcttgcatgtagGCCTTGGTGAAAGTTTATGAAGATGGTACAAAGCATTGGGCATATGGAGGTGAATTCGGGGATGTTCCCAATGACTTGAATTTCTGTTTGAATGGCCTCA

Basic information

species Glycine max
transcript GLYMA15G37670.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G37670.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv13s0067g03000.t01 (Vitis vinifera), 3'ss of exon 11
---gtgagtg-gtttttgaatacc-gtatccaaatcaaattg-atgaatgatcaacatcactttattttgtctgagttctctcaattttacactttgcttgcatgtagGCCTTGGTGAAAGTTTATGAAGATGGTACAAAGCATTGGGCATATGGAGGTGAATTCGGGGATGTTCCCAATGACTTGAATTTCTGTTTGAATGGCCTCA
    |||||| || | ||  |    || |     |     ||  ||  |  |  | || |  | | |       || |     |||||| ||||||     |||  |||   || |||| |||  || ||||||| | ||||||||||||||||||||||| || |||||| | || ||||| ||||| |||||| |||||||| | |
ctcttgagtgagtgtatgtgtctttgtgtttgtgtgtgtgtgtgtgtgttttggagatgatgtcactaga----aggttaaagaattttgcacttt----ccatacagGGGCTGCTGAAGGTTGGTGCAGATGGTGCTAAGCATTGGGCATATGGAGGTGACTTTGGGGATATCCCTAATGATTTGAACTTCTGTCTGAATGGCATTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacatcactttattttgtctgagttctctcaattttacactttgcttgcatgtagGCCTTGGTGAAAGTTTATGAAGATGGTACAAAGCATTGGGCATATGGAGGTGAATTCGGGGATGTTCCCAATGACTTGAATTTCTGTTTGAATGGCCTCA
                                       ctttgctt  CT-rich tract
      actttatttt  TA-rich tract