Sequence
atgc intronic sequence ATGC exonic sequencegtttggcataacatcatgtctcttgatgttgtatttaatatatgatgttatcagatcaagttgttatcaaatgtgacaaaaacatacccaacctcaatttagctttcttgtatgtgaaatttcagCCCCCATGGGATCTTGAAACTAACAAGAAGTACATTCTCCATTACACTTATGGATGTGACTACAATATGAAG
Basic information
species | Glycine max |
transcript | GLYMA15G37490.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G37490.3 (Glycine max), 3'ss of exon 6
lower sequence: AT5G13500.1 (Arabidopsis thaliana), 3'ss of exon 6
gtttggcataacatcatgtctcttgatgttgtattta-atatatgatgttatcagatcaagttgtt--atcaaatgtgacaaaaacatacccaacctcaatttagct---ttcttgtatgtgaaatttcagCCCCCATGGGATCTTGAAACTAACAAGAAGTACATTCTCCATTACACTTATGGATGTGACTACAATATGAAG
|| | || | || || | | || | | |||| |||| |||| ||||| ||||| | ||| | | ||| || | || |||| | | |||||||| || |||||| | || || ||||| || | ||||||||||||||||| |||||||| ||||||
gtaagaatcgaccttgtg-ctgataccttagtgataacatattctatgtcga-agatacttttgttttgtcaaagttacaaaagttgtttctctgctccatattcctaagttctctcacaatatctttcagCCTCCGTGGGATTTGTCTACCAAGGGGAAGTTTATCATTCATTACACTTATGGATGCGACTACAACATGAAG
upper sequence: GLYMA15G37490.3 (Glycine max), 3'ss of exon 6
lower sequence: Vv13s0084g00830.t01 (Vitis vinifera), 3'ss of exon 5
gtttggcat--aacatcatgtctcttgatgttgtatttaatatatgatgttatcag----atcaagttgttatcaaatgtg-acaaaaacatacccaacctcaatttagctttcttgta--tgtgaaatttcagCCCCCATGGGATCTTGAAACTAACAAGAAGTACATTCTCCATTACACTTATGGATGTGACTACAATATGAAG
||||||||| || || | | |||||| | || | || | | || | | ||| || | | | || | ||| | ||| | | | || | |||||| | | || |||||||| ||||||||| | |||||| ||||||| ||| | || ||||||||||||||||||||||| | |||
gtttggcatctaatattttaaattttgatgatatagtctatgttccaagtattttgcattatccagcagagacaacattagtacatgtatatagaagatgatattgaagagtccttgtaattttaaattttcagCCACCATGGGATTTAGAAACTGCAAAGAAGTTTATTATTCACTACACTTATGGATGTGACTACAACTTAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgtgacaaaaacatacccaacctcaatttagctttcttgtatgtgaaatttcagCCCCCATGGGATCTTGAAACTAACAAGAAGTACATTCTCCATTACACTTATGGATGTGACTACAATATGAAG
aaaaacata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttggcataacatcatgtctcttgatgttgtatttaatatatgatgttatcagatcaagttgttatcaaatgtgacaaaaacatacccaacctcaatttagctttcttgtatgtgaaatttcagCCCCCATGGGATCTTGAAACTAACAAGAAGTACATTCTCCATTACACTTATGGATGTGACTACAATATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT