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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattattttatcctttcttgctgctttgtatccctgtcacgtgtgtgtgtatgtgttctatattttaagcttaagattaattatcaatgtctctgcagATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTCTATGATGTTAGAGCGGCCGAAGCAGCACTTAAATCATTAAACAGGAGTGACATAG

Basic information

species Glycine max
transcript GLYMA15G23420.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G23420.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv10s0003g02670.t01 (Vitis vinifera), 3'ss of exon 6
gtgattattttatcctttcttgctgctttgtatccctgtcacgtgtgtgtgtatgtgttctatattttaagcttaagattaattatcaatgtctct---gcagATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTCTATGATGTTAGAGCGGCCGAAGCAGCACTTAAATCATTAAACAGGAGTGACATAG
||||| | ||||       || |   | | ||| ||| ||   |   | |   ||  |  |    ||     ||   ||  ||| |  |||||      ||||||||||||||| || |||||||||||||| || || |||||||| |||||||||||||| || |||||||||||||  |||||||| |||||||||||||
gtgataaatttaattgccttttcaattatttattcctttct--tcattttccttgcttcatgcgattc---tttgtaatctattgtgcatgtcataaaagcagATAAGGGAAACACCACACAAGAGGCATCATAAATTCATTGAATTTTATGATGTTAGAGCTGCAGAAGCAGCACTTAGGTCATTAAATAGGAGTGACATAG

upper sequence: GLYMA15G23420.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ16044 (Selaginella moellendorffii), 3'ss of exon 3
gtgattattttatcctttcttgctgctttgtatccctgtcacgtgtgtgtgtatgtgttctatattttaagcttaagattaattatcaatgtctctgcagATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTCTATGATGTTAGAGCGGCCGAAGCAGCACTTAAATCATTAAACAGGAGTGACATAG
                             |||   ||   |   |    |   | ||||  |    |  |  |      ||| | |   | | ||| |||||| | ||||| |||||||||| ||| ||||| |||||||||||||| || ||  |||| ||||| || |||||     |||| || || || || || |
-----------------------------gtagatctagta---gcacat---tctgtttcacgggtggaagtctcatataactgtttttctgtctccagATACGTGAAACACCTCACAAGAAGCACCACAAATTTATTGAATTCTACGACGTACGAGCCGCCGAGGCTGCACTGCGGGCATTGAATAGAAGCGATATTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7686536|gb|AW757184.1|AW757184
EST:     CAAATGAAGACCTGCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAG                         ATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTCTATGAT
genomic: CAAATGAAGACCTGCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGgtgattattt ... gtctctgcagATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTCTATGAT
EST: gi|254337513|gb|GR845190.1|GR845190
EST:     CAAATGAAGACCTGCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAG                         ATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTCTATGAT
genomic: CAAATGAAGACCTGCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGgtgattattt ... gtctctgcagATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTCTATGAT
EST: gi|193303312|gb|FK272534.1|FK272534
EST:     CAAATGAAGACCTGCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAG                         ATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTCTATGAT
genomic: CAAATGAAGACCTGCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGgtgattattt ... gtctctgcagATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTCTATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgtgtatgtgttctatattttaagcttaagattaattatcaatgtctctgcagATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTCTATGATGTTAGAGCGGCCGAAGCAGCACTTAAATCATTAAACAGGAGTGACATAG
                               gattaat  putative branch site (score: 3)
                                            tgtctct  putative PPT
               tatattttaagcttaa  TA-rich tract