Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatggccactgtctggccctggatggaggaggggagaaaatattttcttcattgaatattttttgatgtttaatcctttcactctgataatacatttcagGTTTTCCGATTGCAAGTGAATAATGGTATTCCTATAAAGAGTTGGTTTGATGATCCATTAGATTGTGCACTGATGTCATTACTTCCCTTTCTAGAGACCT

Basic information

species Glycine max
transcript GLYMA15G23380.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G23380.2 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os01g47540.2 (Oryza sativa), 3'ss of exon 6
-----------------------------------------------------------------------------aatggccac-tgtc-tggccctggatggaggaggggagaaaatattttcttcattgaatattttttgatgtttaatcctttcactctgataata-----cat------ttcagGTTTTCCGATTGCAAGTGAATAATGGTATTCCTATAAAGAGTTGGTTTGATGATCCATTAGATTGTGCACTGATGTCATTACTTCCCTTTCTAGAGACCT---------
                                                                             | ||   |  |||| ||| |||  ||    ||       |||| |    |||||  | |||    ||| || |        |||    ||| ||     |||      ||||||||||||  |||||||||||||||||||| || ||| |||||||||||   ||    |  |||   ||| |        |  |||| || || ||||||          
gtaaactgctgataacttgttctgcgctaatgcacttcgtgttctaaatgttgtcacttatgtttttaagaaggttcagtgttaaagtgtcctggacctacatctctgaatttttgaaatctcccattcatcaactatcgcatgaagtatccgatgagcacctgaatactaatttccatgtttcattcaggttttccagTTGCAAGTGAATAATGGTATACCCATAGAGAGTTGGTTTAGCGACGACTCTGATGAGGCATTACCTCAGCTGATTCCGTTCCTGGAGACCCTTGCTTCTG

upper sequence: GLYMA15G23380.2 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os01g47540.1 (Oryza sativa), 3'ss of exon 6
-----------------------------------------------------------------------------aatggccac-tgtc-tggccctggatggaggaggggagaaaatattttcttcattgaatattttttgatgtttaatcctttcactctgataata-----cat------ttcagGTTTTCCGATTGCAAGTGAATAATGGTATTCCTATAAAGAGTTGGTTTGATGATCCATTAGATTGTGCACTGATGTCATTACTTCCCTTTCTAGAGACCT
                                                                             | ||   |  |||| ||| |||  ||    ||       |||| |    |||||  | |||    ||| || |        |||    ||| ||     |||      ||||||||||||  |||||||||||||||||||| || ||| |||||||||||   ||    |  |||   ||| |        |  |||| || || |||||| 
gtaaactgctgataacttgttctgcgctaatgcacttcgtgttctaaatgttgtcacttatgtttttaagaaggttcagtgttaaagtgtcctggacctacatctctgaatttttgaaatctcccattcatcaactatcgcatgaagtatccgatgagcacctgaatactaatttccatgtttcattcagGTTTTCCAGTTGCAAGTGAATAATGGTATACCCATAGAGAGTTGGTTTAGCGACGACTCTGATGAGGCATTACCTCAGCTGATTCCGTTCCTGGAGACCC

upper sequence: GLYMA15G23380.2 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os01g43870.2 (Oryza sativa), 3'ss of exon 6
aatggccactgtctggccctggatggaggaggggagaaaatattttcttcattgaatattttttgatgtt-taatcctttcactctgataatacatttcagGTTTTCCGATTGCAAGTGAATAATGGTATTCCTATAAAGAGTTGGTTTGATGATCCATTAGATTGTGCACTGATGTCATTACTTCCCTTTCTAGAGACCT---------
      ||| |    ||     ||     ||  |   |    || |  ||  || || ||||   | ||| |||     ||    |  |  |   |||||||||||||  ||||||||| | |||||||| || |||||||| ||||||||||| || | |||    | | || |    ||||| || || || |||||           
-----acacagatatgcttattatttcttagctgcctat---ttcttgtcgatgtatgttttccaaagttgtaagtaaatcttcatctt--tttttttcaggttttccagTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGATGACCCCTCAGACCAGGAATTGGTCGAGTTACTCCCATTCCTGGAGACACTTGTTGGTG

upper sequence: GLYMA15G23380.2 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os01g43870.1 (Oryza sativa), 3'ss of exon 6
----aatggccactgtctggccctggatggaggaggggagaaaatattttcttcattgaatattttttgatgtt-taatcctttcactctgataatacatttcagGTTTTCCGATTGCAAGTGAATAATGGTATTCCTATAAAGAGTTGGTTTGATGATCCATTAGATTGTGCACTGATGTCATTACTTCCCTTTCTAGAGACCT
     |||  ||| |    ||     ||     ||  |   |    || |  ||  || || ||||   | ||| |||     ||    |  |  |   |||||||||||||  ||||||||| | |||||||| || |||||||| ||||||||||| || | |||    | | || |    ||||| || || || |||||  
gtactatgtacacagatatgcttattatttcttagctgcctat---ttcttgtcgatgtatgttttccaaagttgtaagtaaatcttcatctt--tttttttcagGTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGATGACCCCTCAGACCAGGAATTGGTCGAGTTACTCCCATTCCTGGAGACAC

upper sequence: GLYMA15G23380.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv10s0003g02690.t01 (Vitis vinifera), 3'ss of exon 6
aatggccactgtctggccctggatggaggaggggagaaaatattttcttcattg-aatattttttgatgtttaatcctttcactctgataatacatttcagGTTTTCCGATTGCAAGTGAATAATGGTATTCCTATAAAGAGTTGGTTTGATGATCCATTAGATTGTGCACTGATGTCATTACTTCCCTTTCTAGAGACCT
  |  |   | ||| |    ||| | | |     |        |  |||||||| || |     ||||  || |    |||  |    | ||  ||||||||||||||  ||||||||||||||||| |||||||| |||||||||||||||||||| | |||   |||||| || ||| |||||||||| ||||||||| 
tgttactggtatcttgaaaaggaggaatggaaacaagggcctgtgacttcattggaaaagagcctgattattgaaatcttcctttctttgatg-atttcagGTTTTCCAGTTGCAAGTGAATAATGGGATTCCTATTAAGAGTTGGTTTGATGATCCGTCAGACCATGCACTAATTTCACTACTTCCCTTCCTAGAGACCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcattgaatattttttgatgtttaatcctttcactctgataatacatttcagGTTTTCCGATTGCAAGTGAATAATGGTATTCCTATAAAGAGTTGGTTTGATGATCCATTAGATTGTGCACTGATGTCATTACTTCCCTTTCTAGAGACCT
                                    ctctgat  putative branch site (score: 4)
     attgaatattttttga  TA-rich tract