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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtataaattgtgatggtctaagttcacaaactgtgcatgtatatatggatcaatcttgctattttcttcttttttttagaaatacttgttagttaatgcaatccacattcctctttagGCTTCAGATTATCTGGAACAGGCAGAGTATGATACTGGTAACCCCAATGAGGACCTTACAACACAATCCTTGATAAAACAGCTACTTTACAACCCCAAGC

Basic information

species Glycine max
transcript GLYMA15G23150.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814993|gb|BI787268.1|BI787268
EST:     TCAGAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAACCAAA                         GCTTCAGATTATCTGGAACAGGCAGAGTATGATACTGGTAACCCCAATGAG
genomic: TCAGAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAACCAAAgtgagtataa ... tcctctttagGCTTCAGATTATCTGGAACAGGCAGAGTATGATACTGGTAACCCCAATGAG
EST: gi|58023979|gb|CX710720.1|CX710720
EST:     TCAGAAATTNGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAACCAAA                         GCTTCAGATTATCTGGAACAGGCAGAGTATGATACTGGTAACCCCAATGAG
genomic: TCAGAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAACCAAAgtgagtataa ... tcctctttagGCTTCAGATTATCTGGAACAGGCAGAGTATGATACTGGTAACCCCAATGAG
EST: gi|15815000|gb|BI787275.1|BI787275
EST:     TCAGAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAACCAAA                         GCTTCAGATTATCTGGAACAGGCAGAGTATGATACTGGTAACCCCAATGAG
genomic: TCAGAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAACCAAAgtgagtataa ... tcctctttagGCTTCAGATTATCTGGAACAGGCAGAGTATGATACTGGTAACCCCAATGAG
EST: gi|254332819|gb|GR850069.1|GR850069
EST:     TCAGAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAACCAAA                         GCTTCAGATTATCTGGAACAGGCAGAGTATGATACTGGTAACCCCAATGAG
genomic: TCAGAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAACCAAAgtgagtataa ... tcctctttagGCTTCAGATTATCTGGAACAGGCAGAGTATGATACTGGTAACCCCAATGAG
EST: gi|6914968|gb|AW396498.1|AW396498
EST:     TCAGAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAACCAAA                         GCTTCAGATTATCTGGAACAGGCAGAGTATGATACTGGTAACCCCAATGAG
genomic: TCAGAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAACCAAAgtgagtataa ... tcctctttagGCTTCAGATTATCTGGAACAGGCAGAGTATGATACTGGTAACCCCAATGAG
EST: gi|58024165|gb|CX710906.1|CX710906
EST:     CAGAAATTTGTATTTCACTTTTCTC-TTGTTTCTGCGAGCAGTAACCAAA                         GCTTCAGA-TATTCTGGAACAGGCAGAGTATGATACTGGTAACCCCAATGA
genomic: CAGAAATTTGTATTTCACTTTTCTCTTTG-TTCTGCGAGCAGTAACCAAAgtgagtataa ... tcctctttagGCTTCAGATTA-TCTGGAACAGGCAGAGTATGATACTGGTAACCCCAATGA
EST: gi|11274390|gb|BF324743.1|BF324743
EST:     TCATAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAACCAAA                         GCTTCAGATTATCTGGAACAGGCAGAGTATGATACTGGTAACCCCAATGAG
genomic: TCAGAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAACCAAAgtgagtataa ... tcctctttagGCTTCAGATTATCTGGAACAGGCAGAGTATGATACTGGTAACCCCAATGAG
EST: gi|57575810|gb|CX548781.1|CX548781
EST:     TCAGAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAACCAAA                         GCTTCAGATTATCTGGAACAGGCAGAGTATGATACTGGTAACCCCAATGAG
genomic: TCAGAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAACCAAAgtgagtataa ... tcctctttagGCTTCAGATTATCTGGAACAGGCAGAGTATGATACTGGTAACCCCAATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttcttttttttagaaatacttgttagttaatgcaatccacattcctctttagGCTTCAGATTATCTGGAACAGGCAGAGTATGATACTGGTAACCCCAATGAGGACCTTACAACACAATCCTTGATAAAACAGCTACTTTACAACCCCAAGC
                           agttaat  putative branch site (score: 4)
                                      tccacattcctcttt  putative PPT
      ttttttttagaaatac  TA-rich tract