Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccgtgtggtctattctgtagtcctctgtaaacacttccattgcttgtttgttctattacttagtttttttccctgacataacattcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTT

Basic information

species Glycine max
transcript GLYMA15G18170.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G18170.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os08g13690.1 (Oryza sativa), 3'ss of exon 6
gtccgtgtggtctattctgtagtcctctgtaaacacttccattgcttgtttgt--tctattacttagtttttttccctgacataacattcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTT
    || || |   |  ||||| | |   |       |  ||      |||       || |  |  || |||  |||    |    |  |     ||   |||||||||||||  ||||| ||| |||| |||||  |||| |||||||||||||| || || |||||||||||||||||||| || |||||||| |
----gtatgtttgctcttgtaggctttcattgtgttgtatatatgccatttacagctaatcaaattcttatttggcctattgttg-gtcaaccattagGGCTTGGGGAAGCATGACATCATCTGCATTGAGGATCTTGTCCACGAGATCATGACTGTCGGTCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCCT

upper sequence: GLYMA15G18170.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os04g51630.2 (Oryza sativa), 3'ss of exon 6
gtccgtgtggtctattctgtagtcctctgtaaacacttccattgcttgtttgttctattacttagtttttttccctgacataacattcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTT
                   | | |  ||  || | |     ||     |||  | | | | || ||   || |  |  | |    ||   |  |||  |||||| |||||||  ||||| ||| |||| |||||  | |||||||||||||||||||| || || ||||||||||||||||| || || ||||| |
-----------------gtttgccaccttgaatctcacttgttctgcttttactgtgtcaattggtaccttacagt--cttggtgtttg-tatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCAT

upper sequence: GLYMA15G18170.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G094051_T05 (Zea mays), 3'ss of exon 5
gtccgtgtggtctattctgtagtcctctgtaaacacttccattgcttgtttgttctattacttagtttttttccctgacataacattcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTT
||  ||    |     || ||   ||   |      |||  ||   | | ||     |||| |  |  | | | |     |    ||| ||  |||   ||||| |||||    ||||| ||| |||| |||||  | || ||||||||||||||||| || |||||||||||||||||||| || |||||||| |
gtttgtaaacttggaactctacatctggttcctgtgttctgtt-tatatatgacaatttacatgatgatctccaccttt-tggtgttctat--cagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCATGACTGTTGGCCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCAT

upper sequence: GLYMA15G18170.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G344279_T01 (Zea mays), 3'ss of exon 6
gtccgtgtggtctattctgtagtcc---tctgtaaacacttccattgcttgtttgttct--attacttagtttttttccctgacataacatt-caatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTT
||  ||    |     |||||   |   |   |     ||     |  |||||| |  |  |  | |||  |  |   |   || |    ||    |  |||   ||||  |||||    ||||| ||||| || |||||  | || ||||||||||||||||| || |||||||||||||| ||||| || |||||||| |
gtttgtaaacttggaactgtacatctggttcctgtgttctgtttatatttgtttatatttgacaatttacatgatgatctccaccttttgttgttctatcagGGCTTGGACAAGCAAAAAATCATCTGCGTCGAGGATCTTGTTCACGAGATCATGACTGTTGGCCCACACTTCAAGGAGGCGAACAACTTCCTGTGGCCAT

upper sequence: GLYMA15G18170.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 6
------gtccgtgtggtctattctgtagtcctctgtaaacacttccattgcttgtttgttctattacttagtttttttccctgacataacattcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTT
         | || | |||   |     |||| ||| |    |    |||  | ||||     |||| |  |  | | | |  |  |    ||| ||  |||   ||||| |||||    ||||||||| |||| |||||  | ||||||||||||||||| || || |||||||||||||| ||||| || || ||||| |
gtttgcaatcttgagctctgcacctggatcctttgtga----tctgcttg--tatttgacaatttacatgatgatctccacc-atttggtgttctat--cagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATCATGACTGTCGGCCCACACTTCAAGGAGGCGAACAACTTCCTTTGGCCAT

upper sequence: GLYMA15G18170.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G100225_T01 (Zea mays), 3'ss of exon 5
-------gtccgtgtggtctattctgtagtcctctgtaaacacttccattgcttgttt--gttcta---ttactta-----gtttttttccctgacataacattcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTT
         | |      |||   ||  |    |  ||| |   |    | |   |||  |||| |   |||  ||     |  | |||   | || |    | |  ||  ||    | ||||||||    ||||| ||| |||| || ||  |||| ||||||||||| || || || |||||||||||||||||||| || || ||||| |
gtttgtcacctgcaacaactaccgtgctgattccgataatccgattaggtccacatttcagttccagccttagataaaaaagagtctttgttttactttctgtgcg-tgttagGGCCTCGGGAAGCACAATATCATCTGCATTGAGGACCTTGTCCACGAGATCATGACGGTCGGCCCGCACTTCAAGGAGGCCAACAACTTCCTCTGGCCGT

upper sequence: GLYMA15G18170.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G178807_T01 (Zea mays), 3'ss of exon 5
gtccgtgtggtctattctgtagtcctc--tgtaaacacttccattgcttgtttgttctattacttagtttttttccctgacataacattcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTT
||   |     |    ||   || ||   | | |  || ||||        ||      |||  ||   | |||  || || |    |||| |    | | ||||| ||||||   ||||| ||| | || || ||  | || ||||||||||| ||||| || |||||||| ||||||||||| || || ||||| |
gtttttccatccacaactaccgtgctgaatctgattacatccacattccaatttccgccttatgta---tattttgcttaccttctgttcattatagGGCCTTGGG-AAGCATAATATCATCTGCATCGAGGACCTTGTTCACGAGATCATGACGGTTGGCCCACACTTCAAAGAGGCCAACAACTTCCTCTGGCCAT

upper sequence: GLYMA15G18170.1 (Glycine max), 3'ss of exon 6
lower sequence: AT3G13580.2 (Arabidopsis thaliana), 3'ss of exon 6
-----------------------------------------------------------------------------------------gtccgt-gtggtctattctgtagtcc-tctgt---aaacacttccattgcttgtttgttctattacttagtttttttccc----tgacataacattcaatgccagACT-----TTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTT
                                                                                          |   |  |  || ||  || | ||  | |||   | | |  |  ||||    ||      |  |||   | | ||  |     | ||||| | ||   ||    |        | || |||||||| ||||| |||||||| ||||||||||||||||||||||| ||||| || || |||||||| ||||| || ||| ||||||| |
gtgcatatcatcaacctatctccttcatcaagtctggttcagttcctaaagtcaatattattgccgttatccctgtcctagaaaaaatgatgtattatcatcaatgttggattcaatttgtctaacagatatggattgtcatttatcatcaaaactctatgtcttctctatatttacatatcctttgctgttgaatcagGGGCTAGGAAAGCATGGCATCATCTGCGTTGAGGATCTGATCCATGAGATCATGACGGTTGGGCCACATTTCAAGGAAGCCAATAACTTTTTGTGGCCAT

upper sequence: GLYMA15G18170.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 5
gtccgtgtggtctattctgtagtcctctgtaaacacttccattgcttgtttgttctattacttagtttttttccctgacataacatt-caatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTT
         || | || |||  | || | |      || |  ||   | |||||        ||  | || |  || || |    ||   |||  || |||||||||||  ||| || |||||| | |||||||| || |||||||||||||||||||||||||| || |||||||||||||| || || ||||| |
---------gttt-ttatgtcattctgtatcttggttttctatgagcgattgtttg-----ctatatcttgttgctaacctgcttttgtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT

upper sequence: GLYMA15G18170.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g00140.t01 (Vitis vinifera), 3'ss of exon 4
gtccgtgtggtctattctgtagtcctctgtaaacacttccattgcttgtttgttctattacttagtttttttccctgacataacatt-caatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTT
         || | || |||  | || | |      || |  ||   | |||||    | |||  | || || | | || |    ||   |||  || |||||||||||  ||| || |||||| | |||||||| || |||||||||||||||||||||||||| || |||||||||||||| || || ||||| |
---------gttt-ttatgtcattctgtatcttggttttctatgagcgattgtt----tgctttatcttgttgc-taacctgcttttgtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT

upper sequence: GLYMA15G18170.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g00090.t01 (Vitis vinifera), 3'ss of exon 4
gtccgtgtggtctattctgtagtcctctgtaaacacttccattgcttgtt-tgttctattacttagtttttttccctgacataacattcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTT
||   | ||  || |    | ||  | | | |        |||| ||| | | |  | || || |  |  |||             |   |||  || |||||||||||  |||||| |||||| | |||||||| || ||||| |||||||||||||||||||| || |||||||||||||| || || || || |
gtttttatgtcctgtatcttggttttttttgaggg-----attgtttgctatatcttgttgctaacctgcttt-------------tgtgatgatagGCTTTGGGGAAGTTTGGGATTATTTGCATGGAAGATCTTATTCATGAAATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGACCAT

upper sequence: GLYMA15G18170.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv11s0052g00290.t01 (Vitis vinifera), 3'ss of exon 6
gtccgtgtggtctattctgtagtcctctgta-aacacttccattgcttgtttgtt-ctattacttagtttttttccctgacat---aacattcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTT
               | ||| ||    |  | |||| ||  ||      | | || |||| |  | | ||||  |  ||||||      ||   ||  ||| ||||||| |||  ||| ||||||||| |||||||||| ||||||||||| ||||||||||| || |||||||||||||| ||||| || |||||||| |
--------------gtttgttgtaggttaaataacatttatatgttcgatgtattgctataaactggctttt--caatgacattttggtatgttattgcagGCTTTGGGCAAGTTTGGAATCATTTGCATTGAAGATCTCATCCATGAGATTATGACTGTTGGGCCACACTTCAAGGAGGCAAACAACTTCCTGTGGCCAT

upper sequence: GLYMA15G18170.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S2_667V6.2 (Physcomitrella patens), 3'ss of exon 4
gtccgtgtggtctattctgtagtc-ctctgtaaacacttccattgcttgtttgttctattacttagtttttttccctgacataacat-tcaatgcc----agACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTT
   ||| |       |   | |   | |  | || | |   |   | ||     | |  |    |||  |||  |||||   |   | |  ||       || |  | || |||   || ||||| ||  |||| ||||| || ||||||||| | ||||||||||||||||||||||| |||||||| ||| | ||| |||
--tcgtataaatagctgcattgcgacacaattaaaattagtaggacctgacgtgtatcctttgcagtgatttcacctgatgaattctgttgattttgtgtagGCACTTGGAAAGTTGGGTATCATATGTATTGAGGATCTCATTCATGAGATCTTCACTGTTGGACCTCACTTCAAGGAAGCCAACAACTTTTTATGGTCTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410194|gb|EV280009.1|EV280009
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGACCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|22932168|gb|BU549307.1|BU549307
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|192327716|gb|FK021351.1|FK021351
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACTGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|17023603|gb|BM094637.1|BM094637
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATG
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATG
EST: gi|192295535|gb|FG988109.1|FG988109
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|31456852|gb|CD398880.1|CD398880
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|10232891|gb|BE801779.1|BE801779
EST:     AAGCTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACCTTGGGGAAGCATGGTATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|58021409|gb|CX708150.1|CX708150
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|151400307|gb|EV270121.1|EV270121
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|31306158|gb|CD391361.1|CD391361
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|58015969|gb|CX702711.1|CX702711
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|298195246|gb|HO043774.1|HO043774
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGA
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGA
EST: gi|209728368|gb|BW660006.1|BW660006
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|20815022|gb|BQ299500.1|BQ299500
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|33388304|gb|CA851511.1|CA851511
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|209728367|gb|BW660005.1|BW660005
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|15663868|gb|BI701239.1|BI701239
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|192294770|gb|FG986619.1|FG986619
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|9820878|gb|BE556388.1|BE556388
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|151404968|gb|EV274782.1|EV274782
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|12689954|gb|BG156290.1|BG156290
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|151395296|gb|EV265167.1|EV265167
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|192307998|gb|FG998981.1|FG998981
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|58024451|gb|CX711192.1|CX711192
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|16996376|gb|BM085748.1|BM085748
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|8284546|gb|BE022114.1|BE022114
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|57574809|gb|CX547784.1|CX547784
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC
EST: gi|192307999|gb|FG998982.1|FG998982
EST:     AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATTTGATCCATGAGATC
genomic: AAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcttgtttgttctattacttagtttttttccctgacataacattcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTT
                                    acataac  putative branch site (score: 3)
              tattacttagtttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtccgtgtggtctattctgtagtcctctgtaaacacttccattgcttgtttgttctattacttagtttttttccctgacataacattcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG