Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggagcaaattctttctcaaatttgttagtctcccattgtacataaacttacaatggattaacaaattgtgttaatctcatttagCACAGTGATGTACCCCTTAAAATAAAGCGTCTTGCGCGTGATCCTCAAAGGTTTGCTTGGGCAGTAGGTATTGCACAGTCACGATGTATTAACATGCAAA

Basic information

species Glycine max
transcript GLYMA15G16830.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6483112|gb|AW202304.1|AW202304
EST:     CTATTAGAAAACAGCAACAACGATCCTTAGAATTCTGGGAGAATAACTGG                         CACAGTGATGTACCCCTTAAAATAAAGCGTCTTGCGCGTGAATCTT-AAAG
genomic: CTATTAGAAAACAGCAACAACGATCCTTAGAATTCTGGGAGAATAACTGGgtaaggagca ... tctcatttagCACAGTGATGTACCCCTTAAAATAAAGCGTCTTGCGCGTGA-TCCTCAAAG
EST: gi|7692536|gb|AW760639.1|AW760639
EST:     CTATTAGAAAACAGCAACAACGATCCTTAGAATTCTGGGAGAATAACTGG                         CACAGTGATGTACCCCTTAAAATAAAGCGTCTTGCGCGTGATCCTCAAAGG
genomic: CTATTAGAAAACAGCAACAACGATCCTTAGAATTCTGGGAGAATAACTGGgtaaggagca ... tctcatttagCACAGTGATGTACCCCTTAAAATAAAGCGTCTTGCGCGTGATCCTCAAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcccattgtacataaacttacaatggattaacaaattgtgttaatctcatttagCACAGTGATGTACCCCTTAAAATAAAGCGTCTTGCGCGTGATCCTCAAAGGTTTGCTTGGGCAGTAGGTATTGCACAGTCACGATGTATTAACATGCAAA
                                             tctcattt  CT-rich tract
                           attaacaaatt  TA-rich tract