1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tttttgaaagtttatgaacttatcatgccaaatgtattatttttctctggctctattcaaaattagttggtttttttgctcaagttgttcctctgggcagATATGGGACTTGGCAAGTGGAGTATTGAAGCTCACATTAACAGGCCACATTGAACAAGTTAGAG
species | Glycine max |
transcript | GLYMA15G15960.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGTAAATGGCCACGTCCTGTATGGCATGCACCATGGAAGAACTATCAAG ATATGGGACTTGGCAAGTGGAGTATTGAAGCTCACATTAACAGGCCACATEST: gi|10254053|gb|BE821819.1|BE821819
genomic: AAGTAAATGGCCACGTCCTGTATGGCATGCACCATGGAAGAACTA-CAGGgtacgaacct ... ctctgggcagATATGGGACTTGGCAAGTGGAGTATTGAAGCTCACATTAACAGGCCACAT
EST: AAGTAAATGGCCACGTCCTGTATGGCATGCACCATGGAAGAACTATCAAG ATATGGGACTTGGCAAGTGGAGTATTGAAGCTCACATTAACAGGCCACAT
genomic: AAGTAAATGGCCACGTCCTGTATGGCATGCACCATGGAAGAACTA-CAGGgtacgaacct ... ctctgggcagATATGGGACTTGGCAAGTGGAGTATTGAAGCTCACATTAACAGGCCACAT
tctggctctattcaaaattagttggtttttttgctcaagttgttcctctgggcagATATGGGACTTGGCAAGTGGAGTATTGAAGCTCACATTAACAGGCCACATTGAACAAGTTAGAG
ttgttcctct CT-rich tract
tattcaaaattagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttgaaagtttatgaacttatcatgccaaatgtattatttttctctggctctattcaaaattagttggtttttttgctcaagttgttcctctgggcagATATGGGACTTGGCAAGTGGAGTATTGAAGCTCACATTAACAGGCCACATTGAACAAGTTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA