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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaatctttatcttgatagttatacttgccattatatataaattggaaaatatgtttgtcattggactttaattattgtgtttttctcaccagTCAAGTCTCCTCTTTTAGCATACAATAGTTTTGTTGAGGCTGTTTTTGTTCTGAACGACTGTCATGTCCATAATGGGCATCGTGAGTCTCAAGGATCACG

Basic information

species Glycine max
transcript GLYMA15G15920.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G15920.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv05s0020g01160.t01 (Vitis vinifera), 3'ss of exon 6
gtttgaatctttatcttgatagttatacttgccattatatataaattggaaaatatgtttgtc---attgga--ctttaattattgtgtttttctcaccagTCAAGTCTCCTCTTTTAGCATACAATAGTTTTGTTGAGGCTGTTTTTGTTCTGAACGACTGTCATGTCCATAATGGGCATCGTGAGTCTCAAGGATCACG
|||  | |  || |   | || | ||   |  | | ||  | | | ||  |  ||||||| ||   | || |  ||| |  |  |||||||   |  | || |||| | |||||| |||| || || ||||||||||| ||  ||||||||||||| ||||| ||||||||||||||   |  ||| |||||  |  | | 
gttacactgcttttacagttactaatctatctcgtcatggaaacaatg--atttatgtttatccagagtgaattcttcatctgatgtgtttggattgc-agCCAAGGCACCTCTTCTAGCTTATAACAGTTTTGTTGAAGCCATTTTTGTTCTGAATGACTGCCATGTCCATAATGGAGGTAATGATTCTCAGAGTACGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193380823|gb|FK346106.1|FK346106
EST:     AGAAAAGATTAGGCAGTTAGCGGATTTTCTCTTTGGAAATATTTTGAAAG                         TCAAGTCTCCTCTTTTAGCATACAATAGTTTTGTTGAGGCTGTTTTTGTTC
genomic: AGAAAAGATAAGGCAGTTAGCGGATTTTCTCTTTGGAAATATTTTGAAAGgtttgaatct ... ttctcaccagTCAAGTCTCCTCTTTTAGCATACAATAGTTTTGTTGAGGCTGTTTTTGTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaattggaaaatatgtttgtcattggactttaattattgtgtttttctcaccagTCAAGTCTCCTCTTTTAGCATACAATAGTTTTGTTGAGGCTGTTTTTGTTCTGAACGACTGTCATGTCCATAATGGGCATCGTGAGTCTCAAGGATCACG
                            ctttaat  putative branch site (score: 4)
                                          tttttctcacc  putative PPT
                             tttaattattgtgttt  TA-rich tract