Sequence
atgc intronic sequence ATGC exonic sequence...gtatgtcagagtaccttagaaattagaattatgtaaatttcatccttttttctccctgtatattttagatttccctttgtaatttacatttccaatgcagCAAGATTTTTTTGGGAAGCTCATGGATGTTTTTAGAGTTTGTGAAGACTTGGAAAATATGGATGGCCTTCACATGATTTACAAAATAGTCAAAGGGATCA
Basic information
species | Glycine max |
transcript | GLYMA15G15270.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G15270.1 (Glycine max), 3'ss of exon 6
lower sequence: AT3G06670.2 (Arabidopsis thaliana), 3'ss of exon 7
-gtatgtcagagtaccttagaaattagaattatgtaaatttcatcct-tttttctccctgtatattttagatttccctttgtaatttacatttccaatgcagCAAGATTTTTTTGGGAAGCTCATGGATGTTTTTAGAGTTTGTGAAGACTTGGAAAATATGGATGGCCTTCACATGATTTACAAAATAGTCAAAGGGATCA
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tgtaagctcgt-tactttatatactgttattat-tatagtttatcatgtctttagaattatattctggaaacctccttactctaccttttcccttgctgcagCATGATTTCTTCCGGAATCTGATGGGTGTTTTTAAAATATGCGAGGACTTGGAAAATGTTGATGGCCTTCACATGATATTCAACATTGTCAAGGGAATCA
upper sequence: GLYMA15G15270.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv05s0077g01200.t01 (Vitis vinifera), 3'ss of exon 7
----------------------------------------------------------------------gtatgtcagagtaccttagaaattagaattatgtaaatttcatccttttttctccctgtatattttagatttccctttgtaatttacatttccaatgcagCAAGATTTTTTTGGGAAGCTCATGGATGTTTTTAGAGTTTGTGAAGACTTGGAAAATATGGATGGCCTTCACATGATTTACAAAATAGTCAAAGGGATCA
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gtaagtttggatagatttcatgcatatgggcagatgcaaatatttggtcttgaaaataacaataaaataatcacatccaacctcttctgttcttgtcattgtgacgttttagccctttagtatcattgtgtctttttaatgataaa--ataattcattttt---atgcagCAAGAATTTTTCCAAAAGCTGATGGACCTATTTAGGATATGCGAAGACTTGGAAAACATGGATGGCCTTCACATGATATACAAGATTGTCAAAGGGATCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttttctccctgtatattttagatttccctttgtaatttacatttccaatgcagCAAGATTTTTTTGGGAAGCTCATGGATGTTTTTAGAGTTTGTGAAGACTTGGAAAATATGGATGGCCTTCACATGATTTACAAAATAGTCAAAGGGATCA
catttcc CT-rich tract
tgtatattttagattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtcagagtaccttagaaattagaattatgtaaatttcatccttttttctccctgtatattttagatttccctttgtaatttacatttccaatgcagCAAGATTTTTTTGGGAAGCTCATGGATGTTTTTAGAGTTTGTGAAGACTTGGAAAATATGGATGGCCTTCACATGATTTACAAAATAGTCAAAGGGATCA
- - - - - gtacctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctttg