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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattatggctgtttgtcttagacctgtattaattgttgtgttcttcattcagtaggaatttaaccttatctcatactttgcagGACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCT

Basic information

species Glycine max
transcript GLYMA15G14390.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208194205|gb|GD994320.1|GD994320
EST:     TTTAAATCAACATTTTCCCTAATGGCCATCCAAG                         GACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
genomic: TTTAAATCAACA-TTTCCCAAATGGCCATCCAAGgtaattatgg ... tactttgcagGACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
EST: gi|8669339|gb|BE190446.1|BE190446
EST:     TAACTTCATTGCCTGATTTCAAATCAACATTTCCCAAATGGCCATCCAAG                         GACTTAGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
genomic: TAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAATGGCCATCCAAGgtaattatgg ... tactttgcagGACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
EST: gi|15815178|gb|BI787453.1|BI787453
EST:     TAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAATGGCCATCCAAG                         GACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
genomic: TAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAATGGCCATCCAAGgtaattatgg ... tactttgcagGACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
EST: gi|208140682|gb|GD939938.1|GD939938
EST:     TAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAATGGCCATCCAAG                         GACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
genomic: TAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAATGGCCATCCAAGgtaattatgg ... tactttgcagGACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
EST: gi|193309655|gb|FK277163.1|FK277163
EST:     TGGCCATCCAAG                         GACTTAGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
genomic: TGGCCATCCAAGgtaattatgg ... tactttgcagGACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
EST: gi|192304398|gb|FG996720.1|FG996720
EST:     TAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAATGGCCATCCAAG                         GACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
genomic: TAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAATGGCCATCCAAGgtaattatgg ... tactttgcagGACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
EST: gi|192312082|gb|FK003859.1|FK003859
EST:     TAACTTCATTGCCTGATTTCAAATCAACATTTCCCAAATGGCCATCCAAG                         GACTTAGCAAATGTGGTTCCAAATCTTGACGCAGCTGGTCTTAATCTTCTT
genomic: TAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAATGGCCATCCAAGgtaattatgg ... tactttgcagGACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
EST: gi|192302863|gb|FG998545.1|FG998545
EST:     TAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAATGGCCATCCAAG                         GACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
genomic: TAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAATGGCCATCCAAGgtaattatgg ... tactttgcagGACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
EST: gi|22933208|gb|BU550347.1|BU550347
EST:     TAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAATGGCCATCCAAG                         GACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
genomic: TAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAATGGCCATCCAAGgtaattatgg ... tactttgcagGACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
EST: gi|192301719|gb|FG994413.1|FG994413
EST:     TAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAATGGCCATCCAAG                         GACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
genomic: TAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAATGGCCATCCAAGgtaattatgg ... tactttgcagGACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
EST: gi|209726536|gb|BW658090.1|BW658090
EST:     TAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAATGGCCATCCAAG                         GACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
genomic: TAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAATGGCCATCCAAGgtaattatgg ... tactttgcagGACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
EST: gi|214008217|gb|DB988548.1|DB988548
EST:     TAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAATGGCCATCCAAG                         GACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
genomic: TAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAATGGCCATCCAAGgtaattatgg ... tactttgcagGACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaattgttgtgttcttcattcagtaggaatttaaccttatctcatactttgcagGACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCT
                            aatttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattatggctgtttgtcttagacctgtattaattgttgtgttcttcattcagtaggaatttaaccttatctcatactttgcagGACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG