1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aatctgaagtcatcctcaatttttctgccttgatcttgtatattgatgtgtttgtcaatattttcatgttgcttgatgacacattcgtaatgtcctgcagTACTTAGACAGGCCAGGGGTTAGTTTTTGTACCCGAACTACGTATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGAGCACCCAAG
species | Glycine max |
transcript | GLYMA15G12980.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAGATAACTTGTTGATTGCTGGAGGGTTTCAAGGAGAACTTATTTGCAAG TACTTAGACAGGCCAGGGGTTAGTTTTTGTACCCGAACTACGTATGAGGACEST: gi|17024037|gb|BM095071.1|BM095071
genomic: GAGATAACTTGTTGATTGCTGGAGGGTTTCAAGGAGAACTTATTTGCAAGgtattttttt ... tgtcctgcagTACTTAGACAGGCCAGGGGTTAGTTTTTGTACCCGAACTACGTATGAGGAC
EST: GAGATAACTTGTTGATTGCTGGAGGGTTTCAAGGAGAACTTATTTGCAAG TACTTAGACAGGCCAGGGGTTAGTTTTTGTACCCGAACTACGTATGAGGAC
genomic: GAGATAACTTGTTGATTGCTGGAGGGTTTCAAGGAGAACTTATTTGCAAGgtattttttt ... tgtcctgcagTACTTAGACAGGCCAGGGGTTAGTTTTTGTACCCGAACTACGTATGAGGAC
atgtgtttgtcaatattttcatgttgcttgatgacacattcgtaatgtcctgcagTACTTAGACAGGCCAGGGGTTAGTTTTTGTACCCGAACTACGTATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGAGCACCCAAG
tttgtcaatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatctgaagtcatcctcaatttttctgccttgatcttgtatattgatgtgtttgtcaatattttcatgttgcttgatgacacattcgtaatgtcctgcagTACTTAGACAGGCCAGGGGTTAGTTTTTGTACCCGAACTACGTATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGAGCACCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - catcctc
- - - - - - - - - - - - ctgcctt
- - - - - - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgac