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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttcattttcctagtacaagttgtgtacccactatggcatatcaaactttatgccaaattggtaatttagtggtatcagacatctgcatatcgtgtgtaattgaaacaagttggtgcttgctaactgtttttcaaaaaatatcatctcactgcagGCAGAGAAGCACTTGCAGATTCGCCAGGATGCAGAAAGGAGATACATGGCCATGCTCGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATTGGTGCCA

Basic information

species Glycine max
transcript GLYMA15G12930.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58021470|gb|CX708211.1|CX708211
EST:     CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAG                         GCAGAGAAGCACTTGCAGATTCGCCAGGATGCAGAAAGGAGATACATGGCC
genomic: CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAGgtaaatttca ... ctcactgcagGCAGAGAAGCACTTGCAGATTCGCCAGGATGCAGAAAGGAGATACATGGCC
EST: gi|58025295|gb|CX712036.1|CX712036
EST:     CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAG                         GCAGAGAAGCACTTGCAGATTCGCCAGGATGCAGAAAGGAGATACATGGCC
genomic: CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAGgtaaatttca ... ctcactgcagGCAGAGAAGCACTTGCAGATTCGCCAGGATGCAGAAAGGAGATACATGGCC
EST: gi|57576039|gb|CX549010.1|CX549010
EST:     CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAG                         GCAGAGAAGCACTTGCAGATTCGCCAGGATGCAGAAAGGAGATACATGGCC
genomic: CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAGgtaaatttca ... ctcactgcagGCAGAGAAGCACTTGCAGATTCGCCAGGATGCAGAAAGGAGATACATGGCC
EST: gi|18730225|gb|BM525757.1|BM525757
EST:     CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAG                         GCAGAGAAGCACTTGCAGATTCGCCAGGATGCAGAAAGGAGATACATGGCC
genomic: CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAGgtaaatttca ... ctcactgcagGCAGAGAAGCACTTGCAGATTCGCCAGGATGCAGAAAGGAGATACATGGCC
EST: gi|208270291|gb|GE069101.1|GE069101
EST:     CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAG                         GCAGAGAAGCACTTGCAGATTCGCCAGGATGCAGAAAGGAGATACATGGCC
genomic: CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAGgtaaatttca ... ctcactgcagGCAGAGAAGCACTTGCAGATTCGCCAGGATGCAGAAAGGAGATACATGGCC
EST: gi|58024664|gb|CX711405.1|CX711405
EST:     CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAG                         GCAGAGAAGCACTTGCAGATTCGCCAGGATGCAGAAAGGAGATACATGGCC
genomic: CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAGgtaaatttca ... ctcactgcagGCAGAGAAGCACTTGCAGATTCGCCAGGATGCAGAAAGGAGATACATGGCC
EST: gi|57575877|gb|CX548848.1|CX548848
EST:     CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAG                         GCAGAGAAGCACTTGCAGATTCGCCAGGATGCAGAAAGGAGATACATGGCC
genomic: CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAGgtaaatttca ... ctcactgcagGCAGAGAAGCACTTGCAGATTCGCCAGGATGCAGAAAGGAGATACATGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaaacaagttggtgcttgctaactgtttttcaaaaaatatcatctcactgcagGCAGAGAAGCACTTGCAGATTCGCCAGGATGCAGAAAGGAGATACATGGCCATGCTCGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATTGGTGCCA
                                         tcatctc  CT-rich tract
                     taactgtttttcaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaatttcattttcctagtacaagttgtgtacccactatggcatatcaaactttatgccaaattggtaatttagtggtatcagacatctgcatatcgtgtgtaattgaaacaagttggtgcttgctaactgtttttcaaaaaatatcatctcactgcagGCAGAGAAGCACTTGCAGATTCGCCAGGATGCAGAAAGGAGATACATGGCCATGCTCGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATTGGTGCCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT