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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtagaagacaaaattaacagaaatacctatttatttgtttcttctatggcatgatcatattgatagcacttccataaatggttcagggttttatttcatcggtactgactttagtagtttgtgatccagGATATTGTACTAATGACTGTTCAGCAATTGCAGACTCTGGAACTTCTTTGTTAGCTGGTCCAACG

Basic information

species Glycine max
transcript GLYMA15G11670.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G11670.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 7
--------------gtatgtgtagaagacaaaattaacagaaatacctatttatttgtttcttctatggcatgatcatattgatagcacttccataaatggttcagggttttatttcat-cggtactgactttagt--------agtttgtgatc-cagGATATTGTACTAATGACTGTTCAGCAATTGCAGACTCTGGAACTTCTTTGTTAGCTGGTCCAACG
              | |    | |    |   || |||  ||| |       ||| |        | |  | |   | ||| | ||  |||   | ||||||  | |    || ||  |  | |  | |  | |||        ||  |   | | |||| || ||| |    |  ||| ||||||||||||| ||||||||||||||||| || |||||||||
gtgagacccctcttgaaaccattgtgtgctttataaaccaaaa-agtaggaaattggaggaaagaaggaaaagcctagatttagagacctttttttaatggtataagcacataattagtatgattattatgtcagtttgacacaagcataccacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG

upper sequence: GLYMA15G11670.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S99_158V6.1 (Physcomitrella patens), 3'ss of exon 6
gtatgtgtagaagacaaaattaacagaaatacctatttatttgtttcttctatggcatgatcatattgatagcacttcca-taaatggttca-gggttttatttcatcggtactgactttagtagtttgtgatccagGATATTGTACTAATGACTGTTCAGCAATTGCAGACTCTGGAACTTCTTTGTTAGCTGGTCCAACG
                                ||||    | |  ||    || | |         ||||  |||| | | |  || || ||  | | | || | ||  | | | |  |||    | | ||   ||||||  ||| ||   |  ||| | ||||||||||| || ||||||||| ||||||||||||| |||
------------------------------gtctatgatgtagagtcg--catcgaacatctgacctgat--cactacaagtgcatagtccatagatctcatctgattaggagttatcttaaatctctttg---cagGATTCTGTGCTGGAGGATGTGCTGCAATTGCAGATTCCGGAACTTCTCTGTTAGCTGGTCCTACG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatggttcagggttttatttcatcggtactgactttagtagtttgtgatccagGATATTGTACTAATGACTGTTCAGCAATTGCAGACTCTGGAACTTCTTTGTTAGCTGGTCCAACG
                            tactgac  putative branch site (score: 1)
              ttttatttcat  TA-rich tract