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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgaatgatttaattttgatttgttactcattgtgtaacaatacataaatgagtttgagtatacaattaatacttaattattgattgatgaatatttattatatctcatttttaccttaaacaatgcagCTAAAATGTGGTGCTATTGTCGATTGATATATATGCCCATGTCTTACTTATATGGAAAAAAATTTGTGGGTTCAATAACGCCATTAGTCTTAAACTTGAG

Basic information

species Glycine max
transcript GLYMA15G10870.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10870.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 9
gttgaatgatttaattttgatttgttactcattgtgtaacaatacataaatgagtttgagtatacaattaatacttaattattgattgatgaatatttattatatctcatttttaccttaaacaatgcagCTAAAATGTGGTGCTATTGTCGATTGATATATATGCCCATGTCTTACTTATATGGAAAAAAATTTGTGGGTTCAATAACGCCATTAGTCTTAAACTTGAG
                    ||| ||| || ||  | ||  | |     |||  |       |  |  |   | ||    || | | |  ||    || || ||       |||   |  |  |||||||| |||||||||||||| ||||| ||| | || ||||||||||| ||||||||||| |||  |||||| ||  |||| || ||  | ||  || |  ||||
-------------------gtttattagtc-ttaagaaatgacattcccatgtctactttcgtctagctttcattttcccatcgttggtcgagc--ttcttgtaa------tttgagtccataaatgcagCAAAAATGTGGTGCTACTGTCGGTTGGTTTACATGCCCATGTCATACTTATATGGTAAACGATTTGTTGGCCCAATCACACCTCTTGTTCTAGAACTGAG

upper sequence: GLYMA15G10870.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01480.t01 (Vitis vinifera), 3'ss of exon 6
gttgaatgatttaattttgatttgttactcattgtgtaacaatacataaatgagtttgagtatacaattaatacttaattattgattgatgaatatttattatatctcatttttaccttaaacaatgcagCTAAAATGTGGTGCTATTGTCGATTGATATATATGCCCATGTCTTACTTATATGGAAAAAAATTTGTGGGTTCAATAACGCCATTAGTCTTAAACTTGAG
                     || ||| || |   | ||  | |     |||  |       |  || |   | ||   ||| | | |  ||    || || ||       |||   |  |  |||||||| ||||||||||||||  |||| ||| | || ||||||||||| ||| ||||||| |||  ||| || ||  |||| |||||  | ||  || |  | ||
---------------------ttattagtc-tcaagaaatgacattcccatgtctactttggtctaactttcattttcctatcgttggtcgagc--ttcttgtaa------tttgggtccataaatgcagCAAAAATGTGGTGCTACAGTCGGTTGGTTTACATGCCCATGTCATACCTATATGGTAAACGATTCGTTGGCACAATCACGCCTCTTGTTCTAGAACTAAG

upper sequence: GLYMA15G10870.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01220.t01 (Vitis vinifera), 3'ss of exon 5
gttgaatgatttaattttgatttgttactcattgtgtaacaatacataaatgagtttgagtatacaattaatacttaattattgattgatgaatatttattatatctcatttttaccttaaacaatgcagCTAAAATGTGGTGCTATTGTCGATTGATATATATGCCCATGTCTTACTTATATGGAAAAAAATTTGTGGGTTCAATAACGCCATTAGTCTTAAACTTGAG
                         || |  |  | ||  ||| ||||      | |     |     ||    | | ||    ||   ||    | ||   | |   | ||| |    | | |||||||| |||||||||||||| |||||  || | || ||||||||||| ||||||||||| |||  ||| || ||  |||| || ||  | ||  || |  ||||
-------------------------tattggtctt-tagaaatgcatattcccatgtctactttggtctagctttcattttcctatctttgg---tctagcctcttataatttaagtgcata-aatgcagCAAAAATGTGGTGCTACTGTCGGATGGTTTACATGCCCATGTCATACTTATATGGTAAACGATTCGTTGGCCCAATCACACCTCTTGTTCTAGAACTGAG

upper sequence: GLYMA15G10870.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01390.t01 (Vitis vinifera), 3'ss of exon 5
gttgaatgatttaattttgatttgttactcattgtgtaacaatacataaatgagtttgagtatacaattaatacttaattattgattgatgaatatttattatatctcatttttaccttaaacaatgcagCTAAAATGTGGTGCTATTGTCGATTGATATATATGCCCATGTCTTACTTATATGGAAAAAAATTTGTGGGTTCAATAACGCCATTAGTCTTAAACTTGAG
                     || ||| || |   | ||  | |     |||  |       |  || |   | ||   ||| | | | |||    || || ||       |||   |  |  |||||||| ||||||||||||||  |||| ||| | || ||||||||||| ||| ||||||| |||  ||| || ||  |||| |||||  | ||  || |  | ||
---------------------ttattagtc-tcaagaaatgacattcccatgtctactttggtctaactttcattttcctatcgttggttgagc--ttcttgtaa------tttgagtccataaatgcagCAAAAATGTGGTGCTACAGTCGGTTGGTTTACATGCCCATGTCATACCTATATGGTAAACGATTCGTTGGCCCAATCACGCCTCTTGTTCTAGAACTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattattgattgatgaatatttattatatctcatttttaccttaaacaatgcagCTAAAATGTGGTGCTATTGTCGATTGATATATATGCCCATGTCTTACTTATATGGAAAAAAATTTGTGGGTTCAATAACGCCATTAGTCTTAAACTTGAG
     attgattgatgaatat  TA-rich tract