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...ttgtgaaatagttgtgatgtgcttttcaatccttgggttaggtttttatttttacatgtgatttgcaatcaactgacttctattttttcccccttgccagAACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAACTTCGTGCAGGTAACAAAGGCACTTCAGAAGAAGAGTTGGAGGGTACACTTGATAAAG
species | Glycine max |
transcript | GLYMA15G10030.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAG AACCGGCCTGCAGAGTTGEST: gi|193652971|gb|FK600005.1|FK600005
genomic: TCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAGgtacttccca ... cccttgccagAACCGGCCTGCAGAGTTG
EST: TCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAG AACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAACTTCGTGCAEST: gi|193571679|gb|FK527688.1|FK527688
genomic: TCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAGgtacttccca ... cccttgccagAACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAACTTCGTGCA
EST: CTGTAACACCATTAAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAG AACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAACTTCGTGCAEST: gi|193703941|gb|FK645189.1|FK645189
genomic: CTGTAACACCATTAAA-GATTCATTTGAGCATCTCATCAATCTTCGTCAGgtacttccca ... cccttgccagAACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAACTTCGTGCA
EST: TCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAG AACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAACTTCGTGCAEST: gi|193671264|gb|FK607856.1|FK607856
genomic: TCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAGgtacttccca ... cccttgccagAACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAACTTCGTGCA
EST: TCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAG AACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAACTTCGTGCAEST: gi|193546771|gb|FK500470.1|FK500470
genomic: TCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAGgtacttccca ... cccttgccagAACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAACTTCGTGCA
EST: TCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAG AACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAAACTTCGTGC
genomic: TCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAGgtacttccca ... cccttgccagAACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAA-CTTCGTGC
ttatttttacatgtgatttgcaatcaactgacttctattttttcccccttgccagAACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAACTTCGTGCAGGTAACAAAGGCACTTCAGAAGAAGAGTTGGAGGGTACACTTGATAAAG
aactgac putative branch site (score: 2)
cttctattttttcccc CT-rich tract
ttctatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtgaaatagttgtgatgtgcttttcaatccttgggttaggtttttatttttacatgtgatttgcaatcaactgacttctattttttcccccttgccagAACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAACTTCGTGCAGGTAACAAAGGCACTTCAGAAGAAGAGTTGGAGGGTACACTTGATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - tgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - -acatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcaatc