Sequence
atgc intronic sequence ATGC exonic sequencegtaagcttattgctcctttttttttgtcacaaaaaaaatattttccctcttttcttcccctcattttgtatgatccttggatgtgtttcatattaattaacaccacatcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACATGGCCTCCATAACCCTCAACAAAAATTCAGTGCCTG
Basic information
| species | Glycine max |
| transcript | GLYMA15G09640.1 |
| intron # | 6 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G09640.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv04s0008g00770.t01 (Vitis vinifera), 3'ss of exon 9
gtaagcttattgctcctttttttttgtcacaaaaaaaat-attttccctcttttcttcccctcattttgtatgatccttggatgtgtttcatattaattaacaccacatccttta---gGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACATGGCCTCCATAACCCTCAACAAAAATTCAGTGCCTG
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----------------tatttaactatatcagtgaatctcattacaactgcccatttcatttcttctcctgcgactc---actcagtttaatagtaatccatgtgtcatccatcaacagGGTATTGATGGGGCTCGGGCGGAGAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|24135899|gb|BU926409.1|BU926409EST: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTTGATCTAAGGCCATCT GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACATGCCCTCCATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTTGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACATGGCCTCCATAACC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcattttgtatgatccttggatgtgtttcatattaattaacaccacatcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACATGGCCTCCATAACCCTCAACAAAAATTCAGTGCCTG
aattaac putative branch site (score: 2)
catccttt putative PPT
tgtttcatattaatta TA-rich tract
