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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgacactctcatgccttgattttatttgaattatgtttagatgaagcatctattgggttctggttaacggaaaatgatgtctcctcctttctttttttgtctattaaaatgttaataccattctatgtgaaattatgcagGGGAGTGGGTTATTTGCATGAAAATAAGCCATCGCCCATTATTCACCGTGATCTCGAGCCTTC

Basic information

species Glycine max
transcript GLYMA15G09490.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7587824|gb|AW703632.1|AW703632
EST:     GCTTTGAAACCATCAACAGCTGTGAGATTTGCACTTGACATTGCTAG                         GGGAGTGGGTTATTTGCATGAAAATAAGCCATCGCCCATTATTCACCGTGA
genomic: GCTTTGAAACCATCAACAGCTGTGAGATTTGCACTTGACATTGCTAGgtatttgaca ... aattatgcagGGGAGTGGGTTATTTGCATGAAAATAAGCCATCGCCCATTATTCACCGTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctttctttttttgtctattaaaatgttaataccattctatgtgaaattatgcagGGGAGTGGGTTATTTGCATGAAAATAAGCCATCGCCCATTATTCACCGTGATCTCGAGCCTTC
                        tgttaat  putative branch site (score: 3)
      tttttttgtctattaa  TA-rich tract