1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctaaactggtagaaaacttaaagtttgctctgtttcattttcaccatttgaaaaatttgctaatgggaatttggtaacattgatcaaatttttttggcagACCCAAAACTTCCAAGCTTGTTGAAGATGCTGCTATGCGCCCAAAACCAGCTGGATGAGAAAGCTGCTTATCCTCGTGTAAATGATTTATCCACCGCTAC
species | Glycine max |
transcript | GLYMA15G07570.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCAAGTGAG-TGAATGCAGTTATACTTACTAGCCAGAGCCATGAAAA-G ACCCAAA-CTTCCA-GCTTGTTGAAGATGCTGCTATGEST: gi|193499523|gb|FK461276.1|FK461276
genomic: AGCAAGTGAGGTGAATGCAGCTATACTTACTAGCCAGAGCCATGAAAAAGgtttgtactt ... tttttggcagACCCAAAACTTCCAAGCTTGTTGAAGATGCTGCTATG
EST: AGCAAGTGAGGTGAATGCAGCTATACTTACTAGCCAGAGCCATGAAAAAG ACCCTAAACTTCCAAGCTTGTTGAAGATGCTGCTAEST: gi|38193470|gb|CF922676.1|CF922676
genomic: AGCAAGTGAGGTGAATGCAGCTATACTTACTAGCCAGAGCCATGAAAAAGgtttgtactt ... tttttggcagACCCAAAACTTCCAAGCTTGTTGAAGATGCTGCTA
EST: AGCAAGTGAGGTGAATGCAGCTATACTTACTAGCCAGAGCCATGAAAAAG ACCCAAAACTTCCAAGCTTGTTGAAGATGCTGCTATGCGCCCAAAACCAGCEST: gi|16348257|gb|BI973852.1|BI973852
genomic: AGCAAGTGAGGTGAATGCAGCTATACTTACTAGCCAGAGCCATGAAAAAGgtttgtactt ... tttttggcagACCCAAAACTTCCAAGCTTGTTGAAGATGCTGCTATGCGCCCAAAACCAGC
EST: AGCAAGTGAGGTGAATGCAGCTATACTTACTAGCCAGAGCCATGAAAAAG ACCCAAAACTTCCAAGCTTGTTGAAGATGCTGCTATGCGCCCAAAACCAGCEST: gi|58021979|gb|CX708720.1|CX708720
genomic: AGCAAGTGAGGTGAATGCAGCTATACTTACTAGCCAGAGCCATGAAAAAGgtttgtactt ... tttttggcagACCCAAAACTTCCAAGCTTGTTGAAGATGCTGCTATGCGCCCAAAACCAGC
EST: AGCAAGTGAGGTGAATGCAGCTATACTTACTAGCCAGAGCCATGAAAAAG ACCCAAAACTTCCAAGCTTGTTGAAGATGCTGCTATGCGCCCAAAACCAGCEST: gi|192328969|gb|FK021072.1|FK021072
genomic: AGCAAGTGAGGTGAATGCAGCTATACTTACTAGCCAGAGCCATGAAAAAGgtttgtactt ... tttttggcagACCCAAAACTTCCAAGCTTGTTGAAGATGCTGCTATGCGCCCAAAACCAGC
EST: AGCAAGTGAGGTGAATGCAGCTATACTTACTAGCCAGAGCCATGAAAAAG ACCCAAAACTTCCAAGCTTGTTGAAGATGCTGCTATGCGCCCAAAACCAGCEST: gi|22928038|gb|BU545177.1|BU545177
genomic: AGCAAGTGAGGTGAATGCAGCTATACTTACTAGCCAGAGCCATGAAAAAGgtttgtactt ... tttttggcagACCCAAAACTTCCAAGCTTGTTGAAGATGCTGCTATGCGCCCAAAACCAGC
EST: AGCAAGTGAGGTGAATGCAGCTATACTTACTAGCCAGAGCCATGAAAAAG ACCCAAAACTTCCAAGCTTGTTGAAGATGCTGCTATGCGCCCAAAACCAGC
genomic: AGCAAGTGAGGTGAATGCAGCTATACTTACTAGCCAGAGCCATGAAAAAGgtttgtactt ... tttttggcagACCCAAAACTTCCAAGCTTGTTGAAGATGCTGCTATGCGCCCAAAACCAGC
atttgaaaaatttgctaatgggaatttggtaacattgatcaaatttttttggcagACCCAAAACTTCCAAGCTTGTTGAAGATGCTGCTATGCGCCCAAAACCAGCTGGATGAGAAAGCTGCTTATCCTCGTGTAAATGATTTATCCACCGCTAC
ttttttt CT-rich tract
taacattgatcaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaaactggtagaaaacttaaagtttgctctgtttcattttcaccatttgaaaaatttgctaatgggaatttggtaacattgatcaaatttttttggcagACCCAAAACTTCCAAGCTTGTTGAAGATGCTGCTATGCGCCCAAAACCAGCTGGATGAGAAAGCTGCTTATCCTCGTGTAAATGATTTATCCACCGCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT