1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttattatggttataatatataaagtatctataatatgcattcttcaagttgtgcaatggaatactatctgctattgatgatgaaaaatgatattatgcagGATTGGCATTGTGCCTCACATGGAATATTGTAGCTGTCACTTCAGCTTGGATTAAGGGAGAAG
species | Glycine max |
transcript | GLYMA15G07480.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAG GATTGGCATTGTGCCTCACATGGAATATTGTAGCTGTCACTTCAGEST: gi|21994675|gb|BQ786203.1|BQ786203
genomic: ACCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAGgtaagttatc ... tattatgcagGATTGGCATTGTGCCTCACATGGAATATTGTAGCTGTCACTTCAG
EST: ACCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAG GATTGGCATTGTGCCTCACATGGAATATTGTAGCTGTCACTTCAGCTTGGAEST: gi|16343904|gb|BI969499.1|BI969499
genomic: ACCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAGgtaagttatc ... tattatgcagGATTGGCATTGTGCCTCACATGGAATATTGTAGCTGTCACTTCAGCTTGGA
EST: ACCAANNCATCTTCAAAGANNNNAGTATGTTGCANNNACTTCATTGTTAG GATTGGCATTGTGCCTCACATGGAATATGGTAGCTGTCACTTCAGCTTGGAEST: gi|38192157|gb|CF921363.1|CF921363
genomic: ACCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAGgtaagttatc ... tattatgcagGATTGGCATTGTGCCTCACATGGAATATTGTAGCTGTCACTTCAGCTTGGA
EST: ACCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAG GATTGGCATTGTGCCTCACATGGAATATTGTAGCTGTCACTTCAGCTTGGAEST: gi|254315478|gb|GR825287.1|GR825287
genomic: ACCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAGgtaagttatc ... tattatgcagGATTGGCATTGTGCCTCACATGGAATATTGTAGCTGTCACTTCAGCTTGGA
EST: ACCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAG GATTGGCATTGTGCCTCACATGGAATATTGTAGCTGTCACTTCAGCTTGGA
genomic: ACCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAGgtaagttatc ... tattatgcagGATTGGCATTGTGCCTCACATGGAATATTGTAGCTGTCACTTCAGCTTGGA
aagttgtgcaatggaatactatctgctattgatgatgaaaaatgatattatgcagGATTGGCATTGTGCCTCACATGGAATATTGTAGCTGTCACTTCAGCTTGGATTAAGGGAGAAG
tattgat putative branch site (score: 3)
atgaaaaatgatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattatggttataatatataaagtatctataatatgcattcttcaagttgtgcaatggaatactatctgctattgatgatgaaaaatgatattatgcagGATTGGCATTGTGCCTCACATGGAATATTGTAGCTGTCACTTCAGCTTGGATTAAGGGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - -tatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - -tgcaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgatg