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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgccagttttaaaatgttgctctggcataggatatccaccatatttttttttaaacttgtgtaaatttctgaaaaatgtgagtctctcattcttgtagGTTTATGTGGACACATTGGTGAAGAAGGCATATGAGAATTGGATGCATGTTATTGAGTATGATGGCGAGTCTCTGCTAAATTACAATCAGAATAAGACTT

Basic information

species Glycine max
transcript GLYMA15G07330.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G07330.2 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os02g35470.3 (Oryza sativa), 3'ss of exon 7
-tttgccagttttaaaatgttgctctggcataggatatccaccatatttttttttaaacttgtgtaaatttctgaaaaatgtgagtctctcattcttgtagGTTTATGTGGACACATTGGTGAAGAAGGCATATGAGAATTGGATGCATGTTATTGAGTATGATGGCGAGTCTCTGCTAAATTACAATCAGAATAAGACTT
     ||  | |     | |||   |    |    | | | | | |  |     || |  |     | |   || | ||  || |     |  | ||| || | ||||  ||   |||||| ||||| ||||||||| |||||||||||||| | || ||||||||| || | || || |  | ||| ||||| ||||  |
tgacaccgatatgtttcttttgaattcaactgttgtgtacccaagagctgaaaatataaataccctattgagtgcataacctg-gctgaactctattgcagATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTTGTAGAATATGATGGCAAGGCACTCCTGAGCTTCAAGCAGAAAAAGAAAT

upper sequence: GLYMA15G07330.2 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os02g08120.1 (Oryza sativa), 3'ss of exon 7
----tttgccagttttaaaatgttgctctggca--taggatatccaccatatttttttttaaacttgtgtaaatttctgaaaaatgtgagtctctcattcttgtagGTTTATGTGGACACATTGGTGAAGAAGGCATATGAGAATTGGATGCATGTTATTGAGTATGATGGCGAGTCTCTGCTAAATTACAATCAGAATAAGACTT
    | |||    ||||   |  |||    ||   |  ||  |  |   ||||  |||||||     | |  | |  |    |  ||   |   |||||     || | | ||  ||  ||||||| |||||||||||||| ||||||||| |||  ||||| ||||||||  |  ||||  | || |  || | ||| || |   
gagctatgctttatttattct-ctgcatgagcttttgagaactttaagctattcgtttttaataccatattgactgattgggatggta--ttgttcatt---acagCTCTTTGCTGATGCATTGGTTAAGAAGGCATATGATAATTGGATGTATGCCATTGAATATGATGGTAAAGCTCTCTTGAACTCTAAACCGAAGAAAAAGG

upper sequence: GLYMA15G07330.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s0181g00220.t01 (Vitis vinifera), 3'ss of exon 8
-tttgccagttttaaaatgttgctctggcataggatatccaccatatttttttttaaacttgtgtaaatttctgaaaaatgtgagtc-tctcattcttgtagGTTTATGTGGACACATTGGTGAAGAAGGCATATGAGAATTGGATGCATGTTATTGAGTATGATGGCGAGTCTCTGCTAAATTACAATCAGAATAAGACTT
 ||||  |       | | ||    |    |   | |   |  | |       |  ||       ||   |  | ||| ||  | |  | |  |||||| |||| | |||||| || |||||||||||||||||||| ||||||||   |||| | |||||||||||| |||||||  |||| |  || || | |||||  |
gtttgtaaagaaattactattttcttaaattgcaaaaaagaagaaaaaaagaatggaa--aaaagaagcctaagcaaactgccaattgtttggttcttgcagGTCTTTGTGGATACCTTGGTGAAGAAGGCATATGACAATTGGATTAGTGTTGTAGAGTATGATGGCAAGTCTCTTTTAAACTTTAACCAAAGTAAGAGCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4260437|gb|AI416933.1|AI416933
EST:     TACCAATGACCAATATTACTCTGCTGATTCTCTCTCCGACGGTCAANAAG                         GTT-ATGTTGACACATTTGTGAAGAAAGCATATGAGAATTGGATGCATGT
genomic: TACCAATGACCAATATTACTCTGCTGATTCTCTCTCCGACGGTCAA-AAGgtaagtcaac ... attcttgtagGTTTATGTGGACACATTGGTGAAGAAGGCATATGAGAATTGGATGCATGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttttaaacttgtgtaaatttctgaaaaatgtgagtctctcattcttgtagGTTTATGTGGACACATTGGTGAAGAAGGCATATGAGAATTGGATGCATGTTATTGAGTATGATGGCGAGTCTCTGCTAAATTACAATCAGAATAAGACTT
                                       tctctcattcttgt  CT-rich tract
                  taaatttctgaaaaat  TA-rich tract