1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tatttctacatttggacctcagtttctttctttttttaatagatgtctcactattaagtatttttcatcttgctttgcttccactatgtactcaaagaagGGCAGCTCTTGATTCTTCCTAAAGGCTTGCTGTTAGTTTCCCATGAACCGAGTATAGTCAACACGGCTCCTGGACCCCACATTAGAGGGAACACATTGAG
species | Glycine max |
transcript | GLYMA15G05150.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCAGCGTCAGGAGAGTTTACCTTCTGGAGATGAAGEST: gi|21677331|gb|BQ629682.1|BQ629682
genomic: GCAGCGTCAGGAGAGTTTACCTTCTGGAGAT---Ggtaaatacct ... ctcaaaga
EST: GGAACATCATGAATCAGTGCAGCGTCAGGAGAGTTTACCTTCTGGAGATG GGCAGCTCTTGATTCTTCCTAAAGGCTTGCTGTTAGTTTCCCATGAACCGAEST: gi|8286107|gb|BE023666.1|BE023666
genomic: GGAACATCATGAATCAGTGCAGCGTCAGGAGAGTTTACCTTCTGGAGATGgtaaatacct ... ctcaaagaagGGCAGCTCTTGATTCTTCCTAAAGGCTTGCTGTTAGTTTCCCATGAACCGA
EST: GGAACATCATGAATCAGTGCAGCGTCAGGAGAGTTTACCTTCTGGAGATGAAGEST: gi|10237549|gb|BE806437.1|BE806437
genomic: GGAACATCATGAATCAGTGCAGCGTCAGGAGAGTTTACCTTCTGGAGAT---Ggtaaatacct ... ctcaaaga
EST: GGAACATCATGAATCAGTGCAGCGTCAGGAGAGTTTACCTTATGGAGATG GGCAGCTCTTGATTCTTCCTAAAGGCTTGCTGTTAGTTTCCCATGAACCGA
genomic: GGAACATCATGAATCAGTGCAGCGTCAGGAGAGTTTACCTTCTGGAGATGgtaaatacct ... ctcaaagaagGGCAGCTCTTGATTCTTCCTAAAGGCTTGCTGTTAGTTTCCCATGAACCGA
tctcactattaagtatttttcatcttgctttgcttccactatgtactcaaagaagGGCAGCTCTTGATTCTTCCTAAAGGCTTGCTGTTAGTTTCCCATGAACCGAGTATAGTCAACACGGCTCCTGGACCCCACATTAGAGGGAACACATTGAG
gtctcac putative branch site (score: 3)
tattaagtatttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttctacatttggacctcagtttctttctttttttaatagatgtctcactattaagtatttttcatcttgctttgcttccactatgtactcaaagaagGGCAGCTCTTGATTCTTCCTAAAGGCTTGCTGTTAGTTTCCCATGAACCGAGTATAGTCAACACGGCTCCTGGACCCCACATTAGAGGGAACACATTGAG
- - -ctacatt
- - - - - - - - cctcagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgta