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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattctttaaattgaatgacattacacgtcaagtatacttatgctagatggaagctgctggtgattccaatttaaattcctttctgaaaatttaatagtattgatttacctggaaatgataaaaaatatcgtttctataatcaatgtcaaattcagggtatttaccttatatgctatttgtctatttagGTTTCTGCAAGGACCTGAAACTGATCCGGCAACTGTGAGAAAAATTAGAGAGGCAATTGACAATCAAACGGAAGTTACCGTGCAACTGATCAATTATACA

Basic information

species Glycine max
transcript GLYMA15G04850.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04850.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0004g03700.t01 (Vitis vinifera), 3'ss of exon 7
gtattctttaaattgaatgacattacacgtcaagtatacttatgctagatggaagctgctggtgattccaatttaaattcctttctgaaaatttaatagtattgatttacctggaaatgataaaaaatatcgtttctataatcaatgtcaaattcagggtatttaccttatatgct-atttgtctattta--gGTTTCTGCAAGGACCTGAAACTGATCCGGCAACTGTGAGAAAAATTAGAGAGGCAATTGACAATCAAACGGAAGTTACCGTGCAACTGATCAATTATACA
                                                                                       || ||||| |     |||||   ||| |||  |||    | |  | |   | | ||||| |||   | |   | |||   | | ||  | |||| |  |||||  |||| || ||||| ||||| || ||||| || || ||||| ||||| ||||||||||||||||| ||||| || ||||| ||||| || || || || |||
-------------------------------------------------------------------------------------acaagatttatt--ccatgattcgtctgaaaa--atattcgacaatgctgaaacattcaat-tca---ttacaatttttttttaaaatttttatttttggatttatagGTTCCTCCAAGGCCCTGAGACAGATCCTGCGACAGTGAGGAAAATCAGAGAGGCAATTGACAACCAAACAGATGTTACTGTGCAGCTAATTAACTACACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctataatcaatgtcaaattcagggtatttaccttatatgctatttgtctatttagGTTTCTGCAAGGACCTGAAACTGATCCGGCAACTGTGAGAAAAATTAGAGAGGCAATTGACAATCAAACGGAAGTTACCGTGCAACTGATCAATTATACA
                                          tttgtct  CT-rich tract
                        tatttaccttatat  TA-rich tract