1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaatcttgcatccaatttaccctgtatcattgtataatgtatcatatgtagtttacttgagttgtatgtcaatgaataaacatggtaagtttcttatccaatgaagcattcattaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG
species | Glycine max |
transcript | GLYMA15G04290.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCATCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|193581120|gb|FK535459.1|FK535459
genomic: GCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|193370577|gb|FK334101.1|FK334101
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTACCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|193598751|gb|FK552019.1|FK552019
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTGAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|208038499|gb|GD833251.1|GD833251
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|193687214|gb|FK630875.1|FK630875
genomic: TGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGGTGTTEST: gi|193327731|gb|FK295054.1|FK295054
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGA-Ggtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTT
EST: AAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGACCCGATGTTEST: gi|7925193|gb|AW831219.1|AW831219
genomic: AAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAG-CCCGATGTT
EST: TGACAATGTGAGTGCCGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|48574787|gb|CO036077.1|CO036077
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TGACAATGTGAGTGCCGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAGCTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|208313394|gb|GE115978.1|GE115978
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TGACAATGTGAGTGCTGAAGTTGCTGCCTCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|193413289|gb|FK377342.1|FK377342
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|193331092|gb|FK293252.1|FK293252
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|193663871|gb|FK612877.1|FK612877
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: GCATCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|193354448|gb|FK321196.1|FK321196
genomic: GCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TGAAGTCGCTGTCATCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|193445476|gb|FK413967.1|FK413967
genomic: TGAAGTTGCTG-CATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|208154245|gb|GD958406.1|GD958406
genomic: TGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|193608058|gb|FK555711.1|FK555711
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|208303964|gb|GE105683.1|GE105683
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|193607426|gb|FK559153.1|FK559153
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TGACAATGTGAGTGCTGGAGTTGCTGCATCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|7028322|gb|AW458105.1|AW458105
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|193664847|gb|FK610849.1|FK610849
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|193559178|gb|FK515937.1|FK515937
genomic: TGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|193722852|gb|FK657904.1|FK657904
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGGTGTTGEST: gi|208295542|gb|GE090475.1|GE090475
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|193647093|gb|FK593118.1|FK593118
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|207753705|gb|GD723303.1|GD723303
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: CTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|193467546|gb|FK431315.1|FK431315
genomic: CTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGEST: gi|20813897|gb|BQ298375.1|BQ298375
genomic: TTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
gtcaatgaataaacatggtaagtttcttatccaatgaagcattcattaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG
cattaac putative branch site (score: 2)
aataaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcttgcatccaatttaccctgtatcattgtataatgtatcatatgtagtttacttgagttgtatgtcaatgaataaacatggtaagtttcttatccaatgaagcattcattaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG