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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacccatgaacctattgatgtgcttatggatctgcaacattattattaattgttgaagcattacttatattgtatccaccctgatatgcttgttaataatggcacttcaatttgatgtttgtgacatgctttttcaacagGGCCTCCGTGTTGGCCTCAATTTAGCATTAGCCATTGCTCTGCACAATATCCCAGAG

Basic information

species Glycine max
transcript GLYMA15G03820.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213593225|gb|DB973530.1|DB973530
EST:     GTTTGCACAATTTTCCAGAAGGAATGGCAGTGTTCCTTGGATCCTTAAAG                         GGCCTCCGTGTTGGCCTCAATTTAGCATTAGCCATTGCTCTGCACA
genomic: GTTTGCACAATTTTCCAGAAGGAATGGCAGTGTTCCTTGGATCCTTAAAGgtacccatga ... ttttcaacagGGCCTCCGTGTTGGCCTCAATTTAGCATTAGCCATTGCTCTGCACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcttgttaataatggcacttcaatttgatgtttgtgacatgctttttcaacagGGCCTCCGTGTTGGCCTCAATTTAGCATTAGCCATTGCTCTGCACAATATCCCAGAG
                                         tgctttttc  CT-rich tract
     tgttaataat  TA-rich tract