Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcattcaataacctattgactacaagcaacagtttccaatctaaaaagttgttatttatctaattgcatgcttgtatttgctttcagGTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAG

Basic information

species Glycine max
transcript GLYMA15G02780.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G02780.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os01g39310.3 (Oryza sativa), 3'ss of exon 6
------------gtatcattcaataa-cctattgactacaagcaacagtt-tccaatctaaaaagttgttatttatctaattgcatgcttgtatttgctttcagGTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAG
            ||   |     |   | ||||  ||   |       || | || |     ||| |  |||  || | ||||  |  ||||          |||| |||||||||||||| |||||||| ||||| ||| |||||||||| || ||||||||  |||||
gtcagtttgttagtgctacaatgtgggcttattttctttgattcctgattcttcagtggtggaagatactata-atatcattgtgtctttgtcaacctgaatagGTTATGATGAGATTGTTCAGTCCACGTAAAACGACATTGTTGTTTGTTATTCGTGATAAATCAAAG

upper sequence: GLYMA15G02780.1 (Glycine max), 3'ss of exon 6
lower sequence: AC196426.3_FGT007 (Zea mays), 3'ss of exon 5
gtatcattcaataacctattgactacaagcaacagtttccaatctaaaaagttgttatttatctaattgcatgcttgtatt-tgctttcagGTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAG
                                                       |||||| ||       | |||   |  |   |  ||||||||||||| ||||| ||||| |||||||||||| |||||||||| |||||||| ||  ||| |
------------------------------------------------------gtatttaccttgggattttctttcttcatatgtgtagGTCATGATGAGGTTGTTCAGTCCTCGCAAAACAACATTGTTGTTTGTTATACGTGACAAATCAAGG

upper sequence: GLYMA15G02780.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G72960.1 (Arabidopsis thaliana), 3'ss of exon 6
gtatcattcaataacctattgactacaagcaacagtttccaatctaaaaagttgttatttatctaa---ttgcatgcttgtatttgcttt---cagGTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAG
||||  ||    |  ||   ||    ||  |    ||    |||  |||| |  ||  ||| |  |   ||| ||  ||| | |||  ||   ||||| |||||| |||||||||||||||| |||||||||||| ||||||| ||||| ||||| ||   |
gtattttttttgatgctcaggaagttaaaaactctttgtgtatcacaaaaatattttcttaccctaagtttgaatctttggagttgggtttggcagGTGATGATGCGATTGTTTAGTCCACGTAAAACAACAATGCTGTTTGTAATACGAGATAAAACCCGG

upper sequence: GLYMA15G02780.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0002g02200.t01 (Vitis vinifera), 3'ss of exon 6
gtatcattcaataacctattgactacaagcaacagtttccaatctaaaaagttgttatttatctaattgcatgcttgtatttgctttcagGTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAG
           || |   ||   | |   |||   ||   ||||| || || | | | || ||||| |  ||| |  ||| | ||| ||||| |||||| |||||||||||||||| ||||||||  || ||||||| || |||||||| |||| |
----------gtatctcttta--tgctgacaattattctgaatctcaagagct-tcagttgtctaactttatgatgttatatccttacagGTTATGATGCGATTGTTTAGTCCACGAAAAACAACTTTGATGTTTGTTATTCGTGATAAAACAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccaatctaaaaagttgttatttatctaattgcatgcttgtatttgctttcagGTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAG
                         atctaat  putative branch site (score: 3)
                                            tttgctttc  putative PPT
     aatctaaaaagttgtt  TA-rich tract