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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctttgatctccatctggttttagtattttaggataaactgtgaaacaatgagattaatttcttgtcttccaattttgaacagTGATAGACATGTTTATGGCTATGAAGTAGTTCCTCAAGCCATCACAGATGCTCATCTTAATGCCAAGATAAATGGAATAAAAAAATGCAACATTT

Basic information

species Glycine max
transcript GLYMA15G02550.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G02550.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os01g09750.1 (Oryza sativa), 3'ss of exon 6
-------------------------------------------------------------------gtaatctttgatctccatctgg---ttttagtatt-----ttaggata---aactgtgaaacaatgagattaatttcttgtcttccaattttgaacagTGATAGACATGTTTATGGCTATGAAGTAGTTCCTCAAGCCATCACAGATGCTCATCTTAATGCCAAGATAAATGGAATAAAAAAATGCAACATTT------
                                                                    |  | |    |||           ||| || |||     || || ||   |  | |  || |    ||||| |   |  |||||  |||| || ||| |  |  ||||| ||||| ||||||||||||||| |||||||  |||||||| |    || || ||| | ||||| || |  || ||| ||||||      
gtaaattttctcactattatcatgctgttggagagcagttgctactatgtgaggccattttttttcatttgtttcaagtcttagcacaaaactttgagcattcgtcattcggttacccatttattgaaaagcatgattagtagatgttcttctgattt-gaccagGGCAAAGCATGTCTATGGATATGAAGTAGTTCCTGAAGCCATTGCAGATGCTAAAAAGAACGCTAAGCTGAATGGTATCAGCAA-TGCTACATTTGTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaggataaactgtgaaacaatgagattaatttcttgtcttccaattttgaacagTGATAGACATGTTTATGGCTATGAAGTAGTTCCTCAAGCCATCACAGATGCTCATCTTAATGCCAAGATAAATGGAATAAAAAAATGCAACATTT
                        gattaat  putative branch site (score: 3)
                   aatgagattaattt  TA-rich tract